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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009116701.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 297aa MW: 33502.8 Da PI: 10.0472 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009116701.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 347.3 | 3.5e-106 | 1 | 297 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyye............paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83
mdd g+r+ g+++ + ++ ++ +q+ms+iaerda+i+ernla+sekkaavaerdmaflqrd+a+aern+a++erd++l+a
XP_009116701.1 1 MDDGGHRD--NGWHKashgkqwmmqqhQ-PQQHQPSMKQVMSIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAIMERDSALAA 92
77777744..444444455666665431.344444556********************************************************* PP
GAGA_bind 84 lllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkv 178
l++++ s++ t+ ++ + ++ q++++++e+re+e++ +p++ ++ +++k++k+ a+k k+++k+kk++e++ k
XP_009116701.1 93 LQYRDSSMS------------TSRQHQPHIHHMLQVTENTYETRETETSPPPPTK--PKRGRKAKEPKAA-PANKRGPKTQRKVKKENEDDLTKL 172
***888733............333333333344789*********9988777754..4555555555532.333333344556667677777777 PP
GAGA_bind 179 kkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
+++ + sk++++ ++ +ln v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S++PLP+ +++++aR++grKmS++af+klL++L
XP_009116701.1 173 MFDEEATGSKSDWRGQETvGLNRVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMHPLPALPNKKHARVGGRKMSGSAFSKLLSRL 267
77776789******998649*************************************************************************** PP
GAGA_bind 273 aaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
aaeG +dlsnpvDLkdhWAkHGtn+++ti+
XP_009116701.1 268 AAEGhHDLSNPVDLKDHWAKHGTNRYITIK 297
****88***********************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 297 aa
Download sequence Send
to blast |
MDDGGHRDNG WHKASHGKQW MMQQHQPQQH QPSMKQVMSI IAERDAAIQE RNLAISEKKA 60
AVAERDMAFL QRDTAIAERN NAIMERDSAL AALQYRDSSM STSRQHQPHI HHMLQVTENT 120
YETRETETSP PPPTKPKRGR KAKEPKAAPA NKRGPKTQRK VKKENEDDLT KLMFDEEATG 180
SKSDWRGQET VGLNRVVYDE TTMPPPVCSC TGVLRQCYKW GNGGWQSSCC TTTLSMHPLP 240
ALPNKKHARV GGRKMSGSAF SKLLSRLAAE GHHDLSNPVD LKDHWAKHGT NRYITIK
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
