PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116540.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 303aa    MW: 33678 Da    PI: 10.2245
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116540.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.71.7e-1426127186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkr...tsessstc 79 
                     +W+++ + +Li+a  ++  +l+rg+l++++W+ev++++             ++ +  r+ +qCk++++ l+k+yk +k+++++    + + +st+
  XP_009116540.1  26 CWSEEATFTLIQAWGSRYVNLSRGSLRQNHWQEVANAVndrhfntgrnvsaAKSQPYRTDVQCKNRIDTLKKKYKVEKARASGAaagSGGYVSTW 120
                     7************************************************997777789*******************9998876222456789** PP

        trihelix  80 pyfdqle 86 
                     p+f++l+
  XP_009116540.1 121 PFFSDLD 127
                     *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.4E-2424129No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MKHAVNGSFS PGSSRPSPST LPREDCWSEE ATFTLIQAWG SRYVNLSRGS LRQNHWQEVA  60
NAVNDRHFNT GRNVSAAKSQ PYRTDVQCKN RIDTLKKKYK VEKARASGAA AGSGGYVSTW  120
PFFSDLDDLL GETFPTSSAT PSLPMTVVPV PVAPRSAIPR RPAPAPAIMR IGGENLLGYR  180
GNLNTFAAAA AAAASSPAYE DDSDGSRSRS SGGGKRKREE KQGYKEVAEA IERLGEIYER  240
VEERKRKEMV ELEKQRMRFA KELECHRMQL FTEMRVRLHK LRRTKGPTSS ALEYGMMDLP  300
SSF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.261191e-120flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892210.0AC189221.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116540.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A397Y9W60.0A0A397Y9W6_BRACM; Uncharacterized protein
STRINGBra007407.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-105sequence-specific DNA binding transcription factors