PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116504.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 328aa    MW: 36520.9 Da    PI: 6.5784
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116504.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.21.1e-10204247548
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                     kr +r   NR +A+rsR RK+++i eLe+ v +L++e + L  +
  XP_009116504.1 204 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPR 247
                     899********************************998777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-13200264IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.588202254IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.49E-11204258No hitNo description
Gene3DG3DSA:1.20.5.1703.0E-13204255No hitNo description
PfamPF001702.9E-9204248IPR004827Basic-leucine zipper domain
CDDcd147039.22E-23205255No hitNo description
PROSITE patternPS000360207222IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAQLPPKIPT MTTTTTPHWP DFSSQKLPSI AATAAATAAT AGQQNPTWMD EFLDFSSTRR  60
GTHRRSISDS IAFLEAPSSG VGNHHFDRFD DEQFMSMFND DVHQNHHNNH HGSVNGNVGH  120
TRSSSNTSTP SDPNSLTEED NKEQPPSDNN LMDTTDNNNN VAGNNYNESD EVQSQCKTEP  180
QDGAPSSANQ NSGGSSGNRI NDPKRVKRIL ANRQSAQRSR VRKLQYISEL ERSVTSLQTE  240
VSVLSPRVAF LDHQRLLLNV DNSAIKQRIA ALAQDKIFKD AHQEALKREI ERLRQVYHQQ  300
SLKKMENNVS DQSPADIKPS VEKEQLNA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116504.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116504.10.0PREDICTED: basic leucine zipper 61
RefseqXP_013663628.10.0basic leucine zipper 61-like
SwissprotQ9M2K40.0BZP61_ARATH; Basic leucine zipper 61
TrEMBLA0A397Y1B80.0A0A397Y1B8_BRACM; Uncharacterized protein
STRINGBra007380.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17532777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.11e-137bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]