PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009116503.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 253aa MW: 28276.7 Da PI: 8.9714 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.2e-05 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F+++ L H++ H XP_009116503.1 92 FECHYCFRNFPTSQALGGHQNAH 114 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.41E-6 | 88 | 119 | No hit | No description |
Pfam | PF13912 | 2.0E-5 | 91 | 116 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.99 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MDERNAERET KDFMNVESFS QLPFFRRPPS KDKNPKPVRL FGKDFTTGEY SGTTSQQDHS 60 ETKHKEDEEV AEDDQTGDNG KDNSRSNNNR RFECHYCFRN FPTSQALGGH QNAHKRERQL 120 AKRGASSYFH HPDANLYGYR HYPSWSSTSL PAARFYGGNI PGSGPSSSFH TRPINGSPLG 180 LWRSSSSFRG VYNPNAAFTS HVSSDNSILS SLAGSQPHPP LQVGGSAAQN RMSSYRYGLS 240 PNVQDHVSLD LNL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in inflorescence meristems, floral meristems and stem epidermis. {ECO:0000269|PubMed:16679458}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin (GA) (PubMed:16679458, PubMed:17507408). Mediates the induction of GL1 expression by GA in inflorescence organs and is antagonized in its action by the DELLA repressor GAI. Acts upstream of the trichome initiation regulators GL1 and GL3, and downstream of the GA signaling repressor SPINDLY (SPY) (PubMed:16679458). Does not play a significant role in the cytokinin response (PubMed:17507408). Controls trichome branching through GA signaling (PubMed:22210898, PubMed:23825141). Acts downstream of the key regulator STICHEL (STI) in an endoreduplication-independent pathway (PubMed:22210898). Controls trichome cell division indirectly by acting downstream of a key endoreduplication regulator SIAMESE (SIM) (PubMed:23825141). {ECO:0000269|PubMed:16679458, ECO:0000269|PubMed:17507408, ECO:0000269|PubMed:22210898, ECO:0000269|PubMed:23825141}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009116503.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin. {ECO:0000269|PubMed:16679458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009116503.1 | 0.0 | PREDICTED: zinc finger protein GIS | ||||
Refseq | XP_013659894.1 | 0.0 | zinc finger protein GIS-like | ||||
Swissprot | Q84WI0 | 1e-106 | GIS_ARATH; Zinc finger protein GIS | ||||
TrEMBL | A0A397Y2E0 | 0.0 | A0A397Y2E0_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CT36 | 0.0 | M4CT36_BRARP; Uncharacterized protein | ||||
STRING | Bra007378.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2495 | 19 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58070.1 | 1e-104 | C2H2 family protein |