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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009116196.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
AP2 |
| Protein Properties |
Length: 343aa MW: 38181.8 Da PI: 9.8792 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009116196.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 56.1 | 9.3e-18 | 117 | 166 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g
XP_009116196.1 117 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYAAARAYDRAAIKFRG 166
78*******************......55************************998 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009658 | Biological Process | chloroplast organization |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MLDLSLGMFS NYGEDQDRKV PFVSTAGDEE SNISSSSSKD SAAGKDFITF GILKRDDDVV 60
PPPPPSRETG DLFPVADARR NIEFSLDDGH WLRLSSLQRN KQQVVKKSRR GPRSRSSQYR 120
GVTFYRRTGR WESHIWDCGK QVYLGGFDTA YAAARAYDRA AIKFRGLDAD INFVVEDYRQ 180
DLDKMKNLNK VEFVQTLRRE SASFGRGSSK YKGLTLQKCT QLKTHHDQIH LFQNRGWDAA 240
AIKYNNELGK GGVMKSGASI KGNIHNDLEL SLGISSSSQN IKLTTSDYYK GNQSAMGLFG 300
KHSPIYLPVT TMNPLKTVAA SSGFPFITMT TSSSSSMSTS FDP
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269|PubMed:14573523}. |
