PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GATA

Protein Properties

Length: 324aa MW: 35885.7 Da PI: 6.7065

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009116158.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56.4	3.9e-18	233	266	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C +tkTp+WR gp g+ktLCnaCG++y++ + XP_009116158.1 233 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 266 99*****************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	3.2E-91	1	323	IPR016679	Transcription factor, GATA, plant
PROSITE profile	PS50114	11.728	227	263	IPR000679	Zinc finger, GATA-type
SMART	SM00401	7.2E-16	227	277	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.4E-14	231	264	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	5.23E-15	231	290	No hit	No description
CDD	cd00202	2.53E-14	232	279	No hit	No description
Pfam	PF00320	4.2E-16	233	266	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	233	258	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009845	Biological Process	seed germination
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MFGQSFPEDI DCGNFFDNMD DILDFPGCDM DVGFNIGDSD PFPNIWTNHQ DTWPAASDPL 60 FSSNTNSDSS PELYVPFEDI VKVERPASFV EESLVAKKED SFSTNTDSSS SHSQFRSSSP 120 VSVLESSSSS SQTTNATSLV LSGKHGRPRT KRPRPPVQEM DRVNVCGADS RLIVRIPKQF 180 LSDHSKMITK KKKKKAKVTS SYSSSGIDLE TNGSNNNNNV DSYDSEQHPV RKCMHCEVTK 240 TPQWRLGPMG PKTLCNACGV RYKSGRLFPE YRPANSPTFT PALHSNSHKK VAEMRSKRCS 300 GGSYTNEESN LQDLIPNNAY IGVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	154	KRPRP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.736	0.0	bud\| leaf\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009116158.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353461	0.0	AK353461.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-37-G07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009116158.1	0.0	PREDICTED: GATA transcription factor 8
Swissprot	Q9SV30	1e-165	GATA8_ARATH; GATA transcription factor 8
TrEMBL	A0A397YB45	0.0	A0A397YB45_BRACM; GATA transcription factor
TrEMBL	M4CSA7	0.0	M4CSA7_BRARP; GATA transcription factor
STRING	Bra007099.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4975	27	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54810.2	1e-148	GATA family protein

Publications ? help Back to Top
Choi D, et al. iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis. Mol Plant, 2014. 7(5): p. 792-813 [PMID:24380880] Li T,Wu XY,Li H,Song JH,Liu JY A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network. Mol Plant, 2016. 9(5): p. 650-661 [PMID:26961720]