PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009116129.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SRS | ||||||||
Protein Properties | Length: 194aa MW: 21568.3 Da PI: 10.4191 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 166 | 2.1e-51 | 43 | 184 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 ++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstWvp+++ r+ + +++ss+++++ + ++s+++++ +++++s++ XP_009116129.1 43 EEKVCKDCGNRAKKECLFERCRTCCKSRGYNCATHVKSTWVPSSHHRSVSR-SSSSSSDRNKKLKLDSSDKPKSV----------LIVPTTTSRQ 126 6789****************************************9998433.33333333333444444444433..........3333334444 PP DUF702 99 ele.tsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 e++ +++lP +++++avf+++rv++v+ +++e++Yq+ v+i+GhvfkG+L+++G+++ XP_009116129.1 127 ETSfKERLPGKIEAPAVFKRTRVTAVSSnEQAEIGYQANVTISGHVFKGFLHYYGVDH 184 4440345*******************875899************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.1E-47 | 45 | 183 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.1E-26 | 46 | 87 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 5.9E-27 | 133 | 182 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MLGLRNTLFL NQPPSQITQP SPSPVNFTAA DVNNKSSRNS NVEEKVCKDC GNRAKKECLF 60 ERCRTCCKSR GYNCATHVKS TWVPSSHHRS VSRSSSSSSD RNKKLKLDSS DKPKSVLIVP 120 TTTSRQETSF KERLPGKIEA PAVFKRTRVT AVSSNEQAEI GYQANVTISG HVFKGFLHYY 180 GVDHNKSFPS LSNK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009116129.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF446889 | 1e-65 | AF446889.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds. | |||
GenBank | AY052675 | 1e-65 | AY052675.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009116129.2 | 1e-141 | PREDICTED: protein SHI RELATED SEQUENCE 6-like | ||||
Swissprot | Q9M2U4 | 4e-93 | SRS6_ARATH; Protein SHI RELATED SEQUENCE 6 | ||||
TrEMBL | M4CS80 | 1e-140 | M4CS80_BRARP; Uncharacterized protein | ||||
STRING | Bra007072.1-P | 1e-140 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11959 | 23 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54430.1 | 7e-77 | SHI-related sequence 6 |
Publications ? help Back to Top | |||
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