PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115659.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 190aa    MW: 22457.2 Da    PI: 8.4989
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115659.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.43.5e-0974126557
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                     +r +rk +NRe+A+rsR +K++ +ee      +L+ eN++L +++    ++ +
  XP_009115659.1  74 RRKKRKLSNRESAKRSRVKKQKHLEEMNIQLNQLKIENRELENQIRYVIQHFQ 126
                     799************************************99988876655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.5E-968120No hitNo description
SMARTSM003387.9E-1070134IPR004827Basic-leucine zipper domain
PfamPF077161.0E-671119IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.89872135IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.44E-974124No hitNo description
CDDcd147025.01E-1775126No hitNo description
PROSITE patternPS0003607792IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MSTIHPVLSC EPGQTTHVPA FETGFTPWDN SHLFSVFDSS MNKITHSVHE YLSPDSVNRS  60
GPDVVATDSY TDERRKKRKL SNRESAKRSR VKKQKHLEEM NIQLNQLKIE NRELENQIRY  120
VIQHFQRTET ENNRLRLEQR LLHSTLLNIR QVWMLHQIDR SSDYVTWPYD ENTRVTVQHD  180
PSVITNHIIL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17279ERRKKRKL
27394RRKKRKLSNRESAKRSRVKKQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115659.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115659.11e-140PREDICTED: bZIP transcription factor 2
TrEMBLM4F4M51e-138M4F4M5_BRARP; Uncharacterized protein
STRINGBra036025.1-P1e-139(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.13e-59basic leucine-zipper 5