PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115392.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 541aa    MW: 60931.6 Da    PI: 7.0701
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115392.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3383e-12261021597
                     -EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  15 rlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      l +p  f+ +h  g++    kt +l++  s ++W vk+  ++      lt+GW++F+  ++L+ gD+ +F+++g++ f  +v++f
  XP_009115392.1  26 YLNIPVAFFLKHvqGSND-HIKTAKLTTdASAKTWLVKV--DGV----RLTDGWEDFAVGHDLRIGDITIFRHEGEMVF--HVTAF 102
                     588******9**974443.3356666654899*******..555....5***********************9998888..88776 PP
2B359.27.2e-19163247588
                     -..-HHHHTT-EE--HHH.HTT---..--SE.EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeeskt.ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      +++++l+s+rl++p  fa+++g+++ ++k+ ++l +e+grsW++ ++ +k + +++ + GW++F+ +ng+k g   +Fkl++rs
  XP_009115392.1 163 HVSPSSLSSDRLYIPTGFARSNGLDNMSGKEiIVLLNEEGRSWSLDMTCNKVGMQTFVRPGWRRFCAENGMKKGHHYTFKLVRRS 247
                     57889999**************777666555167889**********99999999*************************99853 PP
3B356.74.3e-18279367797
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     ++++l+++ l+l ++f++++g++k  s ++tl++e+g sW + +++   +++++l+ GWk F++ ng+k+ D+++Fkl++ ++ ++v+ ++
  XP_009115392.1 279 SPNSLSTDKLYLQRHFVTANGLEKGLS-EITLKNEWGGSWILGFRHYEPQNHTYLGPGWKTFCQVNGIKAEDSFMFKLVE-TGDKPVLLLC 367
                     577889999**************9887.****************99999999*************************998.5556777776 PP
4B346.37.6e-15444539398
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                         + ++lk++ l+lp  f++ + ++  ++++++l  ++g ++  v l  +k+ g++ ++kGW+eF++a+g+k+g+++ ++l ++ +e+ +v+k
  XP_009115392.1 444 RLSFTQSALKTSVLYLPLAFTRMNCIN--KPIKIMLLGKDGvKKQVVDLLKNKSTGAMRFGKGWREFCDAHGVKVGESFQLELFREdEEAIPVLK 536
                     5567889999999***********877..6779********6666677777888888*************************9988799989998 PP

                     EE- CS
              B3  96 vfr 98 
                     ++ 
  XP_009115392.1 537 FCT 539
                     886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-189112IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-209107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.99712105IPR003340B3 DNA binding domain
CDDcd100175.16E-1313102No hitNo description
SMARTSM010193.7E-1715105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-18152247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-16155253IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.029159258IPR003340B3 DNA binding domain
CDDcd100177.42E-16160254No hitNo description
SMARTSM010191.6E-20160258IPR003340B3 DNA binding domain
PfamPF023624.5E-17162253IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.0E-17266369IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-16271370IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.338273369IPR003340B3 DNA binding domain
SMARTSM010192.0E-18274370IPR003340B3 DNA binding domain
PfamPF023627.9E-17278368IPR003340B3 DNA binding domain
CDDcd100172.62E-12281367No hitNo description
SuperFamilySSF1019361.45E-15438538IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-12438539IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-19442541IPR003340B3 DNA binding domain
PROSITE profilePS5086311.082442540IPR003340B3 DNA binding domain
PfamPF023622.2E-13442539IPR003340B3 DNA binding domain
CDDcd100171.33E-12457530No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MAYDQSLHSP NNPHFFQPLL PGFHTYLNIP VAFFLKHVQG SNDHIKTAKL TTDASAKTWL  60
VKVDGVRLTD GWEDFAVGHD LRIGDITIFR HEGEMVFHVT AFGPSCCDIQ YTSESSHNIN  120
DDSQDQTNNA VTGNSSGEKR KRVKKNPRTK EDSSSDHSQF VAHVSPSSLS SDRLYIPTGF  180
ARSNGLDNMS GKEIIVLLNE EGRSWSLDMT CNKVGMQTFV RPGWRRFCAE NGMKKGHHYT  240
FKLVRRSAPL IIRLSHAEHE PEPATESSLN HSYYVGSVSP NSLSTDKLYL QRHFVTANGL  300
EKGLSEITLK NEWGGSWILG FRHYEPQNHT YLGPGWKTFC QVNGIKAEDS FMFKLVETGD  360
KPVLLLCTSN RGKTPLECSE DRDDVNSLSS DTSSEDDSKE ESQESDKESI EDADRSQQCI  420
VMEKENNSLR CICSSPYSKH RFVRLSFTQS ALKTSVLYLP LAFTRMNCIN KPIKIMLLGK  480
DGVKKQVVDL LKNKSTGAMR FGKGWREFCD AHGVKVGESF QLELFREDEE AIPVLKFCTT  540
T
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115392.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115392.10.0PREDICTED: B3 domain-containing protein REM17-like isoform X1
SwissprotQ84WP31e-154REM17_ARATH; B3 domain-containing protein REM17
TrEMBLM4E7E20.0M4E7E2_BRARP; Uncharacterized protein
STRINGBra024697.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-152B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]