PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009115392.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 541aa MW: 60931.6 Da PI: 7.0701 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38 | 3e-12 | 26 | 102 | 15 | 97 |
-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 15 rlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 l +p f+ +h g++ kt +l++ s ++W vk+ ++ lt+GW++F+ ++L+ gD+ +F+++g++ f +v++f XP_009115392.1 26 YLNIPVAFFLKHvqGSND-HIKTAKLTTdASAKTWLVKV--DGV----RLTDGWEDFAVGHDLRIGDITIFRHEGEMVF--HVTAF 102 588******9**974443.3356666654899*******..555....5***********************9998888..88776 PP | |||||||
2 | B3 | 59.2 | 7.2e-19 | 163 | 247 | 5 | 88 |
-..-HHHHTT-EE--HHH.HTT---..--SE.EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeeskt.ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 +++++l+s+rl++p fa+++g+++ ++k+ ++l +e+grsW++ ++ +k + +++ + GW++F+ +ng+k g +Fkl++rs XP_009115392.1 163 HVSPSSLSSDRLYIPTGFARSNGLDNMSGKEiIVLLNEEGRSWSLDMTCNKVGMQTFVRPGWRRFCAENGMKKGHHYTFKLVRRS 247 57889999**************777666555167889**********99999999*************************99853 PP | |||||||
3 | B3 | 56.7 | 4.3e-18 | 279 | 367 | 7 | 97 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++++l+++ l+l ++f++++g++k s ++tl++e+g sW + +++ +++++l+ GWk F++ ng+k+ D+++Fkl++ ++ ++v+ ++ XP_009115392.1 279 SPNSLSTDKLYLQRHFVTANGLEKGLS-EITLKNEWGGSWILGFRHYEPQNHTYLGPGWKTFCQVNGIKAEDSFMFKLVE-TGDKPVLLLC 367 577889999**************9887.****************99999999*************************998.5556777776 PP | |||||||
4 | B3 | 46.3 | 7.6e-15 | 444 | 539 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 + ++lk++ l+lp f++ + ++ ++++++l ++g ++ v l +k+ g++ ++kGW+eF++a+g+k+g+++ ++l ++ +e+ +v+k XP_009115392.1 444 RLSFTQSALKTSVLYLPLAFTRMNCIN--KPIKIMLLGKDGvKKQVVDLLKNKSTGAMRFGKGWREFCDAHGVKVGESFQLELFREdEEAIPVLK 536 5567889999999***********877..6779********6666677777888888*************************9988799989998 PP EE- CS B3 96 vfr 98 ++ XP_009115392.1 537 FCT 539 886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.06E-18 | 9 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-20 | 9 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.997 | 12 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.16E-13 | 13 | 102 | No hit | No description |
SMART | SM01019 | 3.7E-17 | 15 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-18 | 152 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-16 | 155 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.029 | 159 | 258 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.42E-16 | 160 | 254 | No hit | No description |
SMART | SM01019 | 1.6E-20 | 160 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-17 | 162 | 253 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.0E-17 | 266 | 369 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-16 | 271 | 370 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.338 | 273 | 369 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-18 | 274 | 370 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.9E-17 | 278 | 368 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.62E-12 | 281 | 367 | No hit | No description |
SuperFamily | SSF101936 | 1.45E-15 | 438 | 538 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-12 | 438 | 539 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.8E-19 | 442 | 541 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.082 | 442 | 540 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-13 | 442 | 539 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.33E-12 | 457 | 530 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 541 aa Download sequence Send to blast |
MAYDQSLHSP NNPHFFQPLL PGFHTYLNIP VAFFLKHVQG SNDHIKTAKL TTDASAKTWL 60 VKVDGVRLTD GWEDFAVGHD LRIGDITIFR HEGEMVFHVT AFGPSCCDIQ YTSESSHNIN 120 DDSQDQTNNA VTGNSSGEKR KRVKKNPRTK EDSSSDHSQF VAHVSPSSLS SDRLYIPTGF 180 ARSNGLDNMS GKEIIVLLNE EGRSWSLDMT CNKVGMQTFV RPGWRRFCAE NGMKKGHHYT 240 FKLVRRSAPL IIRLSHAEHE PEPATESSLN HSYYVGSVSP NSLSTDKLYL QRHFVTANGL 300 EKGLSEITLK NEWGGSWILG FRHYEPQNHT YLGPGWKTFC QVNGIKAEDS FMFKLVETGD 360 KPVLLLCTSN RGKTPLECSE DRDDVNSLSS DTSSEDDSKE ESQESDKESI EDADRSQQCI 420 VMEKENNSLR CICSSPYSKH RFVRLSFTQS ALKTSVLYLP LAFTRMNCIN KPIKIMLLGK 480 DGVKKQVVDL LKNKSTGAMR FGKGWREFCD AHGVKVGESF QLELFREDEE AIPVLKFCTT 540 T |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009115392.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009115392.1 | 0.0 | PREDICTED: B3 domain-containing protein REM17-like isoform X1 | ||||
Swissprot | Q84WP3 | 1e-154 | REM17_ARATH; B3 domain-containing protein REM17 | ||||
TrEMBL | M4E7E2 | 0.0 | M4E7E2_BRARP; Uncharacterized protein | ||||
STRING | Bra024697.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5781 | 16 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 1e-152 | B3 family protein |
Publications ? help Back to Top | |||
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