PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009115302.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 277aa MW: 32214 Da PI: 5.875 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.7 | 3.1e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +l +++ G g+W+ a+ g++R +k+c++rw++yl XP_009115302.1 16 KGPWTLEEDTILTNYISHNGEGRWNVLAKSSGLKRKGKSCRLRWLNYL 63 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.4 | 1e-15 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++ q+G++ W++Ia++++ gRt++++k++w++ XP_009115302.1 69 RGNLTPQEQLLILELHCQWGNR-WSKIAQYLP-GRTDNEIKNYWRT 112 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.352 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.16E-28 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-12 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-21 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.96E-8 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 23.772 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-13 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 69 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-22 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-9 | 73 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 277 aa Download sequence Send to blast |
MKKRCNENEE GIEQRKGPWT LEEDTILTNY ISHNGEGRWN VLAKSSGLKR KGKSCRLRWL 60 NYLKPDIKRG NLTPQEQLLI LELHCQWGNR WSKIAQYLPG RTDNEIKNYW RTRVQKQARQ 120 LNIDSSSHQF LEAVRSFWVP RLIHKMKDNS NTNTKTPHPD SLGPVSHDSG FNMGCSTSMS 180 QELTEMSQFI DLSDLETTNL MSLKGSRGSS NQCVSEEYYS SLPCLEEEYM VPTMGNSDIL 240 PFKDCHVADS SYEEDVTQDP MWNMDDIWQF EEYAHFN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-24 | 16 | 118 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 6e-24 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 6e-24 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 47 | 53 | LKRKGKS |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00159 | DAP | Transfer from AT1G25340 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009115302.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM975663 | 0.0 | KM975663.1 Brassica napus MYB transcription factor 116.1 (MYB116.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009115302.1 | 0.0 | PREDICTED: transcription factor MYB57 | ||||
Swissprot | Q9C9G7 | 1e-102 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A078HUE3 | 0.0 | A0A078HUE3_BRANA; BnaA09g28450D protein | ||||
STRING | Bra024760.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2632 | 25 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25340.1 | 1e-163 | myb domain protein 116 |
Publications ? help Back to Top | |||
---|---|---|---|
|