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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009115139.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
HD-ZIP |
Protein Properties |
Length: 840aa MW: 92157.7 Da PI: 6.4587 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009115139.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 58.9 | 8.6e-19 | 20 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
k ++t+eq+e+Le++++++++ps +r++L +++ +++ rq+kvWFqNrR +ek+
XP_009115139.1 20 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilcNIEPRQIKVWFQNRRCREKQ 78
5678*****************************************************97 PP
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2 | START | 173.3 | 1.5e-54 | 169 | 377 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94
+aee+++e++ ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++++etl vi +g g+++l+
XP_009115139.1 169 IAEETLAEFLCKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPM-KVAEILKDRPSWFRDCRSVETLSVIPTGngGTIELI 262
7899******************************************************.8888888888************************** PP
EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
+++ +a+++l++ Rdf+++Ry+ +l++g++v+++ S++ + p+ sss+vRa++l Sg+li+p+++g+s +++v+hvdl+ ++++++lr+l+
XP_009115139.1 263 NTQIYAPTTLAAaRDFWTLRYSTSLEDGSYVVCEKSLTAATGGPNgplSSSFVRAKMLSSGFLIRPCDGGGSIIHIVDHVDLDVSSVPEVLRPLY 357
********************************************99************************************************* PP
HHHHHHHHHHHHHHTXXXXX CS
START 186 ksglaegaktwvatlqrqce 205
+s+ + ++k++va+l++ ++
XP_009115139.1 358 ESSKILAQKMTVAALRHVRQ 377
***************98765 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009855 | Biological Process | determination of bilateral symmetry |
GO:0009880 | Biological Process | embryonic pattern specification |
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis |
GO:0010072 | Biological Process | primary shoot apical meristem specification |
GO:0080060 | Biological Process | integument development |
GO:0003677 | Molecular Function | DNA binding |
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
Protein Sequence Length: 840 aa
Download sequence Send
to blast |
MMAHSMDDRD SPEKGFDSGK YVRYTPEQVE ALERVYAECP KPSSLRRQQL IRECPILCNI 60 EPRQIKVWFQ NRRCREKQRK ESARLQTVNR KLSAMNKLLM EENDRLQKQV SHLVYENGFM 120 KHRINTATGT TTDNGCESVV VSGQQRQQQN PTHQHPQRDA NNPAGLLSIA EETLAEFLCK 180 ATGTAVDWVQ MIGMKPGPDS IGIVAVSRNC SGIAARACGL VSLEPMKVAE ILKDRPSWFR 240 DCRSVETLSV IPTGNGGTIE LINTQIYAPT TLAAARDFWT LRYSTSLEDG SYVVCEKSLT 300 AATGGPNGPL SSSFVRAKML SSGFLIRPCD GGGSIIHIVD HVDLDVSSVP EVLRPLYESS 360 KILAQKMTVA ALRHVRQIAQ ETSGEVQFSG GRQPAVLRTF SQRLCRGFND AVNGFADDGW 420 SPMSSDGGED ITIMINSSSS KFAGSQYGNS FLPSFGSGVL CAKASMLLQN VPPLVLIRFL 480 REHRAEWADY GVDAYCAASL RATPFAVPCV RTGGFPSNQV ILPLAQTLEH EEFLEVVRLG 540 GHAYSPEDMG LSRDMYLLQL CSGVDENVVG GCAQLVFAPI DESFADDAPL LPSGFRVIPL 600 DHKTSPSDHL SVNRTRDLAS SLDGSTKTDA ETNSRLVLTI AFQFTFDNHS RDNVATMARQ 660 YVRNVVGSIQ RVALAITPRP GSMQFPTSPE ALTLARWISR SYNLHTGANM FGADTQGCDG 720 DTLLKQLWNH SDAILCCSLK TNASPVFTFA NQAGLDMLET TLVALQDIML DKTLDDSGRK 780 ALCSEFAKIM QQGYANLPAG ICVSSMGRPV SYEQATVWKV LDDSESNHCL AFILVNWSFV
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. Binds to the DNA sequence 5'-GTAAT[GC]ATTAC-3'. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:17900520, ECO:0000269|PubMed:9747806}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK353258 | 0.0 | AK353258.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-39-H09. |
Publications
? help Back to Top |
- Jia X, et al.
Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Sci., 2015. 233: p. 11-21 [PMID:25711809] - Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] - Wójcik AM,Nodine MD,Gaj MD
miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis. Front Plant Sci, 2017. 8: p. 2024 [PMID:29321785]
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