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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009115019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 432aa MW: 48691.4 Da PI: 6.6896 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.4 | 0.00014 | 323 | 356 | 15 | 53 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++++++ +L++++ + +K + a++L++A+ YI+ XP_009115019.1 323 KLRDKITTLQQIVSPF-----GKTDTASVLQEAITYINF 356 7899999999999998.....8***************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.436 | 308 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-9 | 322 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.43E-4 | 322 | 362 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.7E-7 | 323 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MIREECTPSS SWWEDVHHDD HASSISTSFY HKNSNGNNNN NSNANCEGDN LSISTVNTSN 60 RFDLTAESSS RHSLSAPDHP ASTSDELLRD HVVSSNNHLW SLAYLPGRSL GDQMLDHHHH 120 NNHITSSRNN SSTTSELPFE PVCDNANGWI YDTNQVRYNQ SSDQRLSKLT DLVGKHWSLA 180 PPSNPDMNHN LHHHFDQTSD DISMYRQELE VKNEEDLCYN NELNGGASLF RDAIESSRSF 240 LDIRLSRPLT DINPSFKPSF KALSLSEFGK KEHQTASLAT VRLGSTNAGK KKRCDEVSDE 300 ASKKAKCGRD STHSPDKDLP KAKLRDKITT LQQIVSPFGK TDTASVLQEA ITYINFYQEQ 360 VKLLSTPYMK NSSIKDPWGG WDREEHNKRG PKHLDLKSRG LCLVPISCTP VAYHDNSATD 420 YWSPSYRGSL YR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009115019.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009115019.1 | 0.0 | PREDICTED: transcription factor bHLH111 isoform X2 | ||||
Swissprot | Q9FYJ6 | 0.0 | BH111_ARATH; Transcription factor bHLH111 | ||||
TrEMBL | A0A397XYL9 | 0.0 | A0A397XYL9_BRACM; Uncharacterized protein | ||||
STRING | XP_006415377.1 | 0.0 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31050.1 | 0.0 | bHLH family protein |