PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009115018.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 436aa MW: 49166.9 Da PI: 6.6896

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009115018.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.4	0.00014	327	360	15	53
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++++++ +L++++ + +K + a++L++A+ YI+ XP_009115018.1 327 KLRDKITTLQQIVSPF-----GKTDTASVLQEAITYINF 360 7899999999999998.....8***************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.436	312	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.40E-4	326	366	No hit	No description
SuperFamily	SSF47459	4.84E-9	326	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.8E-7	327	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MIREECTPSS SWWEDVHHDD HASSISTSFY HKNSNGNNNN NSNANCEGDN LSISTVNTSN 60 RFDLTAESSS RHSLSAPDHP ASTSDELLRD HVVSSNNHLW SLAYLPGRSL GDQMLDHHHH 120 NNHITSSRNN SSTTSELPFE PVCDNANGWI YDTNQVRYNQ SSDQRLSKLT DLVGKHWSLA 180 PPSNPDMNHN LHHHFDQTSD DISMYRQELE VKNEEDLCYN NELNGGASLF RDAIESSRSF 240 LDIRLSRPLT DINPSFKPSF KALSLSEFGK KEHQTASLLF SQATVRLGST NAGKKKRCDE 300 VSDEASKKAK CGRDSTHSPD KDLPKAKLRD KITTLQQIVS PFGKTDTASV LQEAITYINF 360 YQEQVKLLST PYMKNSSIKD PWGGWDREEH NKRGPKHLDL KSRGLCLVPI SCTPVAYHDN 420 SATDYWSPSY RGSLYR

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MIREECTPSS SWWEDVHHDD HASSISTSFY HKNSNGNNNN NSNANCEGDN LSISTVNTSN  60
RFDLTAESSS RHSLSAPDHP ASTSDELLRD HVVSSNNHLW SLAYLPGRSL GDQMLDHHHH  120
NNHITSSRNN SSTTSELPFE PVCDNANGWI YDTNQVRYNQ SSDQRLSKLT DLVGKHWSLA  180
PPSNPDMNHN LHHHFDQTSD DISMYRQELE VKNEEDLCYN NELNGGASLF RDAIESSRSF  240
LDIRLSRPLT DINPSFKPSF KALSLSEFGK KEHQTASLLF SQATVRLGST NAGKKKRCDE  300
VSDEASKKAK CGRDSTHSPD KDLPKAKLRD KITTLQQIVS PFGKTDTASV LQEAITYINF  360
YQEQVKLLST PYMKNSSIKD PWGGWDREEH NKRGPKHLDL KSRGLCLVPI SCTPVAYHDN  420
SATDYWSPSY RGSLYR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009115018.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009115018.1	0.0	PREDICTED: transcription factor bHLH111 isoform X1
Swissprot	Q9FYJ6	0.0	BH111_ARATH; Transcription factor bHLH111
TrEMBL	A0A3P5YJ89	0.0	A0A3P5YJ89_BRACM; Uncharacterized protein
STRING	XP_006415377.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8055	19	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	0.0	bHLH family protein