PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009114993.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 387aa MW: 42807.9 Da PI: 9.0836

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009114993.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.1	4.8e-18	19	109	2	73
trihelix 2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt +e+++Liea++ ++er r++ ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r + XP_009114993.1 19 WTLNETMVLIEAKKMDDERRMRRSiglpaaeqshdsrsssgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVE 109 ************666666665445555666666667777669999**************************************9843 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.713	11	94	IPR017877	Myb-like domain
Pfam	PF13837	3.8E-13	18	109	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MAGKSGGLAM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAAEQ SHDSRSSSGN 60 KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERRRVES SFAAESSSSA 120 AAETGTYWTM EKSERKERNL PSNMSPQTYQ ALFDVVESKT HPSSTAATNV TAAVAAAAAS 180 GNGSGGGLQI QKMIQQQQEQ GLGFVQKHQM IQPHVLLPLH PPPPPPLPPS QALQPRPLLL 240 SPPPPPSFHA QPILPTKDTS SDSDTSEHPD TSPAKRRRTI PTTTAGPSGA GRGNAETEEG 300 ETVVAAAFSR SASVIANAIR ESEERQDRRH KEVMSLEERR LMIEESNVQI NREGMNGLVE 360 AINKLASSIF AFASSSHHNN QHQGGPS

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MAGKSGGLAM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAAEQ SHDSRSSSGN  60
KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERRRVES SFAAESSSSA  120
AAETGTYWTM EKSERKERNL PSNMSPQTYQ ALFDVVESKT HPSSTAATNV TAAVAAAAAS  180
GNGSGGGLQI QKMIQQQQEQ GLGFVQKHQM IQPHVLLPLH PPPPPPLPPS QALQPRPLLL  240
SPPPPPSFHA QPILPTKDTS SDSDTSEHPD TSPAKRRRTI PTTTAGPSGA GRGNAETEEG  300
ETVVAAAFSR SASVIANAIR ESEERQDRRH KEVMSLEERR LMIEESNVQI NREGMNGLVE  360
AINKLASSIF AFASSSHHNN QHQGGPS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009114993.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189444	0.0	AC189444.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070J23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009114993.1	0.0	PREDICTED: uncharacterized protein LOC103840254 isoform X1
TrEMBL	M4E324	0.0	M4E324_BRARP; Uncharacterized protein
STRING	Bra023175.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	2e-67	Trihelix family protein