PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114936.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 480aa    MW: 52619.4 Da    PI: 10.0393
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114936.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-057292323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ C++ F+r  nL+ H r+H
  XP_009114936.1 72 CEVCNRGFNREQNLQLHGRVH 92
                    *****************9998 PP
2zf-C2H213.10.00029146168123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+ks+  +s+ k+H + +
  XP_009114936.1 146 WKCDKCPKSYALQSDWKTHSKIC 168
                     58*****************9876 PP
3zf-C2H213.70.00019176194523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg++Fsr++n++ H  ++
  XP_009114936.1 176 DCGTTFSRRENYNAHKALC 194
                     9**************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.8E-56992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.83E-76992No hitNo description
PROSITE profilePS5015711.1367092IPR007087Zinc finger, C2H2
SMARTSM003550.537092IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
PfamPF128740.00147292No hitNo description
SMARTSM00355110111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.0E-5134167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.83E-7141166No hitNo description
SMARTSM0035556146173IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MSSSYSQSIP LIATGANNFN QKEMEMTMTQ KRNTFVSPSL RKQRNQPGNR NPDAEVIALS  60
PKTIMATNRF LCEVCNRGFN REQNLQLHGR VHNLPWKPKQ KSEKEARRKV FICPEPTCVH  120
HDPSHALRDF TGIKKHYYRK HGEKQWKCDK CPKSYALQSD WKTHSKICGI KVHRCDCGTT  180
FSRRENYNAH KALCDALNQE SGRNPTGSIT NMAAAAGGSD GRQDFYGGAA SALGRLQDFY  240
ACAASALGRQ DFYGGAASAL GRHGFYRGAA SALSHNQFGN NSNTGYNLNR SSSNKFEGFV  300
PHPTNPNPGP TNFPMQCPSN QASLAHNDQS LRSQHDLISL GARINNNNNN TNHGYFQNNT  360
KTSNQTLFAH GADINDPSVW QRGLTPSSSS GVVVNGFGDN DKGNLQGRMN SLAMTTNQQG  420
WSASNIFGPH FGNNLSMGGS DVLTLGVNGG SVSKGRGDRN PAPLDTQMKF AYPNRPFGNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-22142203364Zinc finger protein JACKDAW
5b3h_F2e-22142203364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009114936.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114936.10.0PREDICTED: protein indeterminate-domain 6, chloroplastic-like
RefseqXP_009114937.10.0PREDICTED: protein indeterminate-domain 6, chloroplastic-like
SwissprotQ8RWX71e-176IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLM4E3720.0M4E372_BRARP; Uncharacterized protein
STRINGBra023223.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-157C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]