 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009114911.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
bZIP |
| Protein Properties |
Length: 384aa MW: 40780.5 Da PI: 5.4738 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009114911.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 67 | 3.3e-21 | 277 | 339 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
e+elkr+rrk++NRe+ArrsR+RK+ae++eL++++++L +eN +L+ e+++l+ ++++l +e+
XP_009114911.1 277 ERELKRQRRKESNRESARRSRLRKQAECDELAQRADVLNGENASLRAEINKLRSQYEELVAEN 339
89********************************************************98877 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 384 aa
Download sequence Send
to blast |
MGSSEVDKSG EENEPKTPPP PSSSAPVTSQ EPSSDVATPD WSGFQAYSPM PPHGYVASSP 60
QPHPYMWGVQ HMIPPYGTPP HPYVAMYPPG GMYAHPSIPP GSYPYSPYAM PSPNGMAEAS 120
GNTGSGVEGD GKQAEVKEKL PIKRSKGSLG SLNMIIGKKN EAGKNSGASA NGACSKSAES 180
GSDGSSEGSD ANSQNDSGSR HNGKDGETAS DSAQGPPRNG SNQPVNQIVP VTPVSATGVP 240
APPTNLNMGM DYWSGHGTTV PGVVVDGSQS QTWVQDEREL KRQRRKESNR ESARRSRLRK 300
QAECDELAQR ADVLNGENAS LRAEINKLRS QYEELVAENN ALKNRFSTVR SLEGVNLDGK 360
EQEPEISTRQ DVAETTRGSY NNSA
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 293 | 299 | RRSRLRK |
| 2 | 293 | 300 | RRSRLRKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353505 | 0.0 | AK353505.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-47-I14. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT1G32150.1 | 1e-180 | basic region/leucine zipper transcription factor 68 |
