 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009114893.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
C3H |
| Protein Properties |
Length: 361aa MW: 38635.7 Da PI: 7.7513 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009114893.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 29.5 | 1.3e-09 | 82 | 105 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25
+kt+lC+ f++ GtC+y +C+FaH
XP_009114893.1 82 FKTKLCCKFRA-GTCPYVTNCNFAH 105
69*********.************* PP
|
| 2 | zf-CCCH | 42.7 | 9.4e-14 | 235 | 260 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt++C+ + tG+C++G++C+FaHg
XP_009114893.1 235 WKTRICNKWEITGYCPFGAKCHFAHG 260
8************************8 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 1.6E-13 | 79 | 114 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.03E-7 | 79 | 112 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0039 | 81 | 107 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.671 | 81 | 108 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.7E-7 | 82 | 105 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.6 | 159 | 186 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.2E-6 | 159 | 186 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.887 | 159 | 187 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.1E-7 | 160 | 186 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.4E-17 | 230 | 264 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.68E-10 | 231 | 265 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.2E-9 | 234 | 261 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.178 | 234 | 262 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.8E-11 | 235 | 260 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 361 aa
Download sequence Send
to blast |
MSHRRDSSGD VVHVIPTNNP PPENWFPNLG DTSVWATEDD YNRVWAVNPD GDNGPPNKKT 60
RGSPSSASAA SNRTKAIGKM FFKTKLCCKF RAGTCPYVTN CNFAHTVEEL RRPPPNWQEI 120
VAAHEEERSG SGTPATVEPR EEYQIPSLVS STDESGGRSF KGRHCKKFYT EEGCPYGETC 180
TFLHDEASRN RESVAISLGP GGYGGGGSGG GNSNVVVLGG GGSGSGVDIL KPSNWKTRIC 240
NKWEITGYCP FGAKCHFAHG AAELHRFGGG LVEGEGKDGG VSSNLDIKQT GPNPKGHSDT 300
TTPLLSPGVV PHNADAGYHS GVALQRASSA VTQKPGIRTH QKWKGPAKIS RIYGDWIDDI 360
E
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189255 | 0.0 | AC189255.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019O20, complete sequence. |
