PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114787.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 183aa    MW: 20695 Da    PI: 4.9071
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114787.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-192068355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr++k +g+Wv+eIr+p   gk++r++lg++ tae+Aa+a++ a+ +l+g
  XP_009114787.1 20 YRGVRRRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDSAAIYLRG 68
                    9****998.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-301977IPR001471AP2/ERF domain
PfamPF008472.4E-131968IPR001471AP2/ERF domain
SMARTSM003808.4E-351982IPR001471AP2/ERF domain
PROSITE profilePS5103223.1171976IPR001471AP2/ERF domain
CDDcd000183.73E-212078No hitNo description
SuperFamilySSF541714.97E-222077IPR016177DNA-binding domain
PRINTSPR003672.7E-102031IPR001471AP2/ERF domain
PRINTSPR003672.7E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MENNHASQRE QSYSVDQVSY RGVRRRKWGK WVSEIREPGK KTRIWLGSYE TAEMAAAAYD  60
SAAIYLRGRG TYLNFPEHAG SFPRPESFSS EHVQVAAREA ALMFKPGVSF AEHAIGSGQG  120
PSRVGLSPDQ IQAIIDFPMD SPRMGWMQDL EVNDYEELYG RCCGQCDGDE FSEIQPLQSI  180
WDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-162081668ATERF1
3gcc_A2e-162081668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009114787.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893410.0AC189341.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB041L12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114787.11e-136PREDICTED: ethylene-responsive transcription factor ERF022
RefseqXP_013717440.11e-136ethylene-responsive transcription factor ERF022
SwissprotQ9LQ287e-86ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLA0A397XZB91e-134A0A397XZB9_BRACM; Uncharacterized protein
TrEMBLM4EGU41e-134M4EGU4_BRARP; Uncharacterized protein
STRINGBra028009.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.17e-87ERF family protein