PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

XP_009114711.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 253aa MW: 27890.9 Da PI: 4.6666

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009114711.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.3	2.8e-13	187	232	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++Le+AveY+k Lq XP_009114711.1 187 SIAERMRRTRISDRIRRLQELVPNM----DKQTNTADMLEEAVEYVKALQ 232 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.742	181	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.05E-16	184	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.41E-12	185	236	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.8E-16	186	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-13	187	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-10	187	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MQSTHSGGGG EGGGGGGGDV SRGGLSRIRS APATWIETLL EDDEEDDLKP NLCLTELLTG 60 NSAGLTSPDT FDFPSSVEQG LYNHQSGFYR QNSSPADFLS GSGATTDGVL SNFEIPANYD 120 YLPPNVNISP GSKRSREIEA QFSSQMKEEQ MSSGVSGMMD MNMDTLLDDS VPFRVRAKRG 180 CATHPRSIAE RMRRTRISDR IRRLQELVPN MDKQTNTADM LEEAVEYVKA LQRQIQELTE 240 QQKRCRCTPK EEQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009114711.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009114710.1	0.0	PREDICTED: transcription factor bHLH80
Swissprot	Q9C8P8	1e-129	BH080_ARATH; Transcription factor bHLH80
TrEMBL	A0A397Y4D2	0.0	A0A397Y4D2_BRACM; Uncharacterized protein
STRING	Bra028088.1-P	1e-174	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35460.1	1e-108	bHLH family protein