PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114710.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 253aa    MW: 27890.9 Da    PI: 4.6666
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114710.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-13187232655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  XP_009114710.1 187 SIAERMRRTRISDRIRRLQELVPNM----DKQTNTADMLEEAVEYVKALQ 232
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.742181231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-16184247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.41E-12185236No hitNo description
Gene3DG3DSA:4.10.280.103.8E-16186245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-13187237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10187232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MQSTHSGGGG EGGGGGGGDV SRGGLSRIRS APATWIETLL EDDEEDDLKP NLCLTELLTG  60
NSAGLTSPDT FDFPSSVEQG LYNHQSGFYR QNSSPADFLS GSGATTDGVL SNFEIPANYD  120
YLPPNVNISP GSKRSREIEA QFSSQMKEEQ MSSGVSGMMD MNMDTLLDDS VPFRVRAKRG  180
CATHPRSIAE RMRRTRISDR IRRLQELVPN MDKQTNTADM LEEAVEYVKA LQRQIQELTE  240
QQKRCRCTPK EEQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009114710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114710.10.0PREDICTED: transcription factor bHLH80
SwissprotQ9C8P81e-129BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A397Y4D20.0A0A397Y4D2_BRACM; Uncharacterized protein
STRINGBra028088.1-P1e-174(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-108bHLH family protein