PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009114562.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 167aa MW: 19457.4 Da PI: 10.6955 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 64.1 | 2.5e-20 | 15 | 59 | 2 | 46 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 prlrW+++LH+ Fv +v+qLGG+ kAtPk+i+++m+vk+Ltl+h+ XP_009114562.1 15 PRLRWASDLHHYFVYVVNQLGGERKATPKKIVQAMGVKSLTLSHM 59 8*****************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-18 | 11 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.06E-6 | 13 | 58 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-13 | 15 | 58 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MENPIVRFYT KSKMPRLRWA SDLHHYFVYV VNQLGGERKA TPKKIVQAMG VKSLTLSHMY 60 RNKKRRDSVQ AERRMRQEMR WRQSQEHLQI YERLRDATEF MQNQRRLSDN KEKTIAFLKP 120 SNKTMEVGHA DDGVVAAGYG ANVRLDSTGV LKGEEKLSLG LTLGLNY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009114562.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009114562.1 | 1e-123 | PREDICTED: putative Myb family transcription factor At1g14600 isoform X3 | ||||
TrEMBL | A0A078FQB9 | 1e-118 | A0A078FQB9_BRANA; BnaA09g20380D protein | ||||
TrEMBL | A0A3P5YGK1 | 1e-118 | A0A3P5YGK1_BRACM; Uncharacterized protein | ||||
STRING | Bra029503.1-P | 1e-117 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04580.1 | 2e-30 | G2-like family protein |