PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009114561.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 172aa MW: 20079.1 Da PI: 10.7433

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009114561.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.8	2.7e-29	15	68	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrW+++LH+ Fv +v+qLGG+ kAtPk+i+++m+vk+Ltl+hvkSHLQ+YR XP_009114561.1 15 PRLRWASDLHHYFVYVVNQLGGERKATPKKIVQAMGVKSLTLSHVKSHLQMYRN 68 8****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-27	11	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.09E-14	13	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-22	15	70	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MENPIVRFYT KSKMPRLRWA SDLHHYFVYV VNQLGGERKA TPKKIVQAMG VKSLTLSHVK 60 SHLQMYRNKK RRDSVQERRM RQEMRWRQSQ EHLQIYERLR DATEFMQNQR RLSDNKEKTI 120 AFLKPSNKTM EVGHADDGVV AAGYGANVRL DSTGVLKGEE KLSLGLTLGL NY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-14	16	72	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-14	16	72	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-14	16	72	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-14	16	72	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-14	16	72	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-14	16	72	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-14	16	72	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-14	16	72	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009114561.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009114561.1	1e-126	PREDICTED: putative Myb family transcription factor At1g14600 isoform X2
TrEMBL	M4EL36	1e-125	M4EL36_BRARP; Uncharacterized protein
STRING	Bra029503.1-P	1e-126	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04580.1	4e-39	G2-like family protein