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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009114510.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
MYB |
| Protein Properties |
Length: 334aa MW: 38115.4 Da PI: 6.569 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009114510.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 56 | 9.4e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+ Ed++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl
XP_009114510.1 15 KGPWTPAEDQKLIDYINKHGYGNWRTLPKNAGLERCGKSCRLRWTNYL 62
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 54.3 | 3.2e-17 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rgr++ eE+e++++++ +G++ W++Ia++++ gRt++++k++w+++
XP_009114510.1 68 RGRFSFEEEEIIIQLHSIMGNK-WSAIAARLP-GRTDNEIKNYWNTH 112
89********************.*********.************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 334 aa
Download sequence Send
to blast |
MGRSPCLDKK IGLKKGPWTP AEDQKLIDYI NKHGYGNWRT LPKNAGLERC GKSCRLRWTN 60
YLRPDIKRGR FSFEEEEIII QLHSIMGNKW SAIAARLPGR TDNEIKNYWN THIRKRLLKL 120
GIDPVTHSPR LDLLDISSIL SSSVHNSSHH HQQNMLRLMM GDGNHHHQPL VNPEILKLAT 180
SLFSNSQQQY KNQNNPTNTH EVNQPEVNQY QNGYNIIGNQ ELQSCFPSMD QFAEFQDPMP 240
TTTFPDSVHS LPLNQDYDYS TSNFALEPFY SDFASVLATP SSSPTPLDSS STTYINSSTC 300
STEDEKESYC NNNFMNSSEI GPDYSFDVNG FLQF
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in flowers and at lower levels in rosette leaves and cauline leaves. Expressed at low levels in roots, stems and siliques. {ECO:0000269|PubMed:26139822}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may function in salt stress response. {ECO:0000305|PubMed:26139822}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:26139822}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF386932 | 1e-173 | AF386932.1 Arabidopsis thaliana Unknown protein mRNA, complete cds. |
| GenBank | BT001182 | 1e-173 | BT001182.1 Arabidopsis thaliana Unknown protein (At4g05100) mRNA, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Xu R, et al.
Salt-induced transcription factor MYB74 is regulated by the RNA-directed DNA methylation pathway in Arabidopsis.
J. Exp. Bot., 2015. 66(19): p. 5997-6008
[PMID:26139822] - Huang KC,Lin WC,Cheng WH
Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
BMC Plant Biol., 2018. 18(1): p. 40
[PMID:29490615]
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