PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009114329.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 563aa MW: 61940.8 Da PI: 4.7992 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.5 | 9.8e-13 | 392 | 437 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L XP_009114329.1 392 NHVEAERQRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAISYINEL 437 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.1E-55 | 68 | 255 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.282 | 388 | 437 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.20E-15 | 391 | 442 | No hit | No description |
SuperFamily | SSF47459 | 3.4E-18 | 391 | 457 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.0E-18 | 392 | 458 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-10 | 392 | 437 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-16 | 394 | 443 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MDDHRSRVSL SPPDAHMSNY FLNQSTATDD DNASAAMEAF IGTNHWSQQP SLPPPPPPSL 60 SQFNEDTLQQ RLQTLIESAG ERWTYAIFWQ ISHDFDSPAG ENTVILGWGD GYYRGEEDKE 120 KKKKQSSSSN PAEQEHRKRV IRELNSLIAG GGAGVSDEAN DEEVTDTEWF FLVSMTQSFV 180 NGVGLPGESF LNSRVIWLSG SGALTGSGCE RARQGEVYGL QTIVCIAAEN GVVELGSSEV 240 ISQSSDLMDK VNGLFNGNGG GEASSWGFNL NPDQGENDPA LWLSEPNLTG IEPVQETPAI 300 ENAADLNFSS SGLNQNGNFK QGSSSNKKRS PVGKDEEMLS FSTVVRSAAK SVDSDHSDIE 360 ASVVKEAIIV EPEKKPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYS LRAVVPNVSK 420 MDKASLLGDA ISYINELKTK LQQAETDKEE VQKQLDRMSK EGGGSRRAKE RKSNLDSASS 480 VEMEIDVKII GWDVMIRVQC GKKNHPGARF MEALKELDLE VNHASLSMVN DLMIQQATVK 540 MGSQFFNHDQ LKAALMLKVG EDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rru_A | 1e-114 | 27 | 251 | 8 | 227 | Transcription factor MYC3 |
4ywc_A | 1e-114 | 27 | 251 | 8 | 227 | Transcription factor MYC3 |
4ywc_B | 1e-114 | 27 | 251 | 8 | 227 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 373 | 381 | KKPRKRGRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Constitutively expressed in roots, stems, leaves, flowers, and seedlings. {ECO:0000269|PubMed:12136026, ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:21335373}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan, jasmonic acid (JA) and other stress-responsive gene regulation. With MYC2 and MYC4, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269|PubMed:12136026, ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009114329.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Barely up-regulated by jasmonic acid. {ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21335373}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009114329.1 | 0.0 | PREDICTED: transcription factor MYC3-like | ||||
Swissprot | Q9FIP9 | 0.0 | MYC3_ARATH; Transcription factor MYC3 | ||||
TrEMBL | A0A397XV80 | 0.0 | A0A397XV80_BRACM; Uncharacterized protein | ||||
STRING | Bo9g065530.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1265 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46760.1 | 0.0 | bHLH family protein |