PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009114324.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 507aa MW: 56093.1 Da PI: 6.1564

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009114324.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	5.9e-12	341	386	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h ++Er RR+++N++f Lr +P+ K++Ka+ L A+ YIk+L XP_009114324.1 341 NHVQAERLRREKLNQRFYALRATVPNV-----SKMDKASLLGDAISYIKEL 386 6999********************6.....5**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.5E-47	39	221	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	16.856	337	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-17	340	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.15E-12	340	387	No hit	No description
Pfam	PF00010	1.5E-9	341	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.3E-16	341	407	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-14	343	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MDSLNTNVTA SMIDALMSSP SSGFWPPQSP ANPSPDSALQ KRLQAVLNGT HEAWTYAIFW 60 TPSYYDYSGE SVLKWGDGIY KGEEADNTRR RRRRMTVAER EHWSIILPEL SSMISDEDVP 120 VIDGEGGVEV SDTEWFYMVS MTVSFGSETG LPGKAFATYK PVWVTGSDPI LASGCDRAKK 180 GGDSGLQTIV CIPLDNGVLE LGSTVEIQQN PDLFNKIRVV FSFEGSRDFL GDPNSNSFQP 240 FSTHLENGGG STTVTVNANL YPNPVYPQTV NYATSPLERA LHSPNRNYPH QIPIDNGELL 300 HSAGDIDGSD HSDIEATVVP GNKQKKKRGR KLANGRKEPL NHVQAERLRR EKLNQRFYAL 360 RATVPNVSKM DKASLLGDAI SYIKELKSRA ENAESERNAI QIQLNKLKEE MAGRNVVCRG 420 GENASEIETA NIDVKILGCD AMVRLESSKR NHPAARLMNA FMDLDVELNH ASISVIHDLM 480 IQQATVKMGS RMYTQDQLRA MLVSKIN

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MDSLNTNVTA SMIDALMSSP SSGFWPPQSP ANPSPDSALQ KRLQAVLNGT HEAWTYAIFW  60
TPSYYDYSGE SVLKWGDGIY KGEEADNTRR RRRRMTVAER EHWSIILPEL SSMISDEDVP  120
VIDGEGGVEV SDTEWFYMVS MTVSFGSETG LPGKAFATYK PVWVTGSDPI LASGCDRAKK  180
GGDSGLQTIV CIPLDNGVLE LGSTVEIQQN PDLFNKIRVV FSFEGSRDFL GDPNSNSFQP  240
FSTHLENGGG STTVTVNANL YPNPVYPQTV NYATSPLERA LHSPNRNYPH QIPIDNGELL  300
HSAGDIDGSD HSDIEATVVP GNKQKKKRGR KLANGRKEPL NHVQAERLRR EKLNQRFYAL  360
RATVPNVSKM DKASLLGDAI SYIKELKSRA ENAESERNAI QIQLNKLKEE MAGRNVVCRG  420
GENASEIETA NIDVKILGCD AMVRLESSKR NHPAARLMNA FMDLDVELNH ASISVIHDLM  480
IQQATVKMGS RMYTQDQLRA MLVSKIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	1e-41	36	223	6	194	Transcription factor MYC3
4rqw_B	1e-41	36	223	6	194	Transcription factor MYC3
4rs9_A	1e-41	36	223	6	194	Transcription factor MYC3
4yz6_A	1e-41	36	223	6	194	Transcription factor MYC3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	93	RRRRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009114324.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009114324.1	0.0	PREDICTED: transcription factor bHLH28-like
Swissprot	Q9LUK7	1e-160	BH028_ARATH; Transcription factor bHLH28
TrEMBL	M4DLZ2	0.0	M4DLZ2_BRARP; Uncharacterized protein
STRING	Bra017523.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13953	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46830.1	1e-158	NACL-inducible gene 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Song S, et al. MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses. Plant Cell Physiol., 2017. 58(10): p. 1752-1763 [PMID:29017003] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]