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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009114323.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
bHLH |
| Protein Properties |
Length: 509aa MW: 56441.3 Da PI: 5.9638 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009114323.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 30.8 | 5.3e-10 | 340 | 385 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+h ++Er RR+++N f Lr +P+ K++Ka+ L A+ YI++L
XP_009114323.1 340 NHVQAERLRREKLNMQFYALRATVPNV-----SKMDKASLLGDAICYINEL 385
6999**********************6.....5***************998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 509 aa
Download sequence Send
to blast |
MDHLNTNFTA SMIEALMNSP SSDSWPPLSP ANPSPDSALQ KRLQAVLNGT HEAWTYVIFW 60
TPSYYDFSGD SVLKWGDGIY KGEEADKTRR RRRTVAENEH RSTILRELSS MISDEALLVM 120
GDEDDLEVSD PSWFYLTSMT VSFGSGSGLP GKAFATYKPV WVTGSDHIMG SGCDRAKKGG 180
DLGLQTIVCI PLDNGVLELG STAEIQQTPD LFNKIRVVFS FEGSRDFSGD PNSNSFPRFS 240
TQLDNGGGSS TVTFSPYPGP FYPQILNTLS QEINFNTLEG DHSGEIHSTN RNAYPGQIQN 300
DDGHIDDFVH SDIEATVAPD NKRKKKRGRK LANGRKEPLN HVQAERLRRE KLNMQFYALR 360
ATVPNVSKMD KASLLGDAIC YINELKSRAE NAESKKNAIQ MELNKLREEI AGRNAVSSVC 420
RGEGNASENE TANIDVKILG CDAMVRLESS KRNHPAARLM NAFMDLDVEL NHASISVIHD 480
LMIQQATVKM GSRMYTQDQL RAMLVSKIN
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4rqw_A | 5e-47 | 36 | 221 | 6 | 194 | Transcription factor MYC3 |
| 4rqw_B | 5e-47 | 36 | 221 | 6 | 194 | Transcription factor MYC3 |
| 4rs9_A | 5e-47 | 36 | 221 | 6 | 194 | Transcription factor MYC3 |
| 4yz6_A | 5e-47 | 36 | 221 | 6 | 194 | Transcription factor MYC3 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 88 | 93 | RRRRRT |
| 2 | 321 | 329 | KRKKKRGRK |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Chen X,Huang H,Qi T,Liu B,Song S
New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
Plant Signal Behav, 2016. 11(2): p. e1135280
[PMID:26829586] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470] - Song S, et al.
MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses.
Plant Cell Physiol., 2017. 58(10): p. 1752-1763
[PMID:29017003] - Min JH, et al.
Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
Front Plant Sci, 2017. 8: p. 2100
[PMID:29321786]
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