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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009114210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 264aa MW: 29511.7 Da PI: 7.2606 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.4 | 2.4e-31 | 35 | 87 | 2 | 54 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prl+Wtp+LH++Fv+av+ LGG+++AtPk +l++m+vkgLt++hvkSHLQ++R XP_009114210.1 35 PRLKWTPDLHRCFVNAVDMLGGQHRATPKLVLKMMDVKGLTISHVKSHLQMHR 87 8***************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.361 | 31 | 91 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-28 | 31 | 88 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.13E-13 | 35 | 87 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-22 | 35 | 87 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.8E-8 | 36 | 87 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MGKRGGKNGN ENYDGVGFNG QGGSGVRSYV RSPVPRLKWT PDLHRCFVNA VDMLGGQHRA 60 TPKLVLKMMD VKGLTISHVK SHLQMHRGSK LTLGKPEENS LFSIRRQDTE EDYLQDYLSL 120 HTRNDCPTGF HTFSLSSHSS LRGRRKGHTS ESRGGDDVDD SLHIMNMKTN GTTTFPSHHF 180 HQNTEKETNP WHEHEHEHKH EHEEEELSLS LSLNHHHLRS NGSSVSETSD AVSTCSAPFV 240 NKDCFGSSPK IDLDLNLSIS LLGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-17 | 36 | 90 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 36 | 90 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 36 | 90 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 36 | 90 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.20075 | 5e-53 | bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009114210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009114210.1 | 0.0 | PREDICTED: putative Myb family transcription factor At1g14600 isoform X2 | ||||
Swissprot | Q700D9 | 3e-58 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A078FYM8 | 1e-158 | A0A078FYM8_BRANA; BnaC09g20940D protein | ||||
STRING | Bo9g071530.1 | 1e-158 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 1e-72 | G2-like family protein |