PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114209.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 265aa    MW: 29667.8 Da    PI: 7.4183
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114209.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.42.4e-313587254
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54
                    prl+Wtp+LH++Fv+av+ LGG+++AtPk +l++m+vkgLt++hvkSHLQ++R
  XP_009114209.1 35 PRLKWTPDLHRCFVNAVDMLGGQHRATPKLVLKMMDVKGLTISHVKSHLQMHR 87
                    8***************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3613191IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-283188IPR009057Homeodomain-like
SuperFamilySSF466891.15E-133587IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-223587IPR006447Myb domain, plants
PfamPF002492.9E-83687IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGKRGGKNGN ENYDGVGFNG QGGSGVRSYV RSPVPRLKWT PDLHRCFVNA VDMLGGQHRA  60
TPKLVLKMMD VKGLTISHVK SHLQMHRGSK LTLGKPEENS LFSIRRQDTE EDYLQDYLSL  120
HTRNDCPTGF HTFSLSSHSS LRRGRRKGHT SESRGGDDVD DSLHIMNMKT NGTTTFPSHH  180
FHQNTEKETN PWHEHEHEHK HEHEEEELSL SLSLNHHHLR SNGSSVSETS DAVSTCSAPF  240
VNKDCFGSSP KIDLDLNLSI SLLGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-173690357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-173690357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-173690357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-173690357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.200755e-53bud
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009114209.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114209.10.0PREDICTED: putative Myb family transcription factor At1g14600 isoform X1
SwissprotQ700D95e-58MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A078FYM81e-158A0A078FYM8_BRANA; BnaC09g20940D protein
TrEMBLA0A397XVH01e-158A0A397XVH0_BRACM; Uncharacterized protein
STRINGBo9g071530.11e-158(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.14e-72G2-like family protein