PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009113983.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 245aa    MW: 28483.3 Da    PI: 5.8153
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009113983.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.3e-1085133154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+r h + Er RR + ++++  L +llP a     +K++K +i+ekAv+ I +L
  XP_009113983.1  85 RCRQHMMKERTRRMKQKQSYLALHSLLPFA-----TKNDKNSIVEKAVDQIGQL 133
                     6889**************************.....9*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-1180148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.00E-782133No hitNo description
PROSITE profilePS5088812.25284133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-785133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-787151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDNFFLDSIL EEEDIFWDLI AGDVSGNADN TVSVVNRSAF RSYERNTEQT MVSSSSSVNV  60
NKRMLNLLRK IWEEKKNALA PENERCRQHM MKERTRRMKQ KQSYLALHSL LPFATKNDKN  120
SIVEKAVDQI GQLDEYKKEL ERRMNVLEAK SATDHDKMTG TKIRFSLQEP LSGIDSMVEI  180
LQCLKSMGTK LKTVQANFSP HEFSATMNIE TQIRGEEVEE RVERRLQETE WKLLVLPEAS  240
RIEDY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009113983.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113983.10.0PREDICTED: transcription factor bHLH92-like
SwissprotQ9FIX51e-121BH092_ARATH; Transcription factor bHLH92
TrEMBLM4EFD90.0M4EFD9_BRARP; Uncharacterized protein
STRINGBra027501.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96022537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-110bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]