PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009113875.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 242aa MW: 27361.1 Da PI: 9.882

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009113875.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.4	2e-34	6	129	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +G+rF+Ptdeel+++yLk+k+ g++ ++++i+e++i+++eP+ Lp+ k+k+++ wyfFs++++ t+k ++r+t+sg+Wk+tg++ ++ +k XP_009113875.1 6 VGYRFSPTDEELIKFYLKNKILGNEWLVTDAISEINIFSYEPQFLPAlsKIKSNDLVWYFFSPKES---TKKATRRVTRSGFWKKTGRSMNINNK 97 7**********************99989************5348888888***877...4578999**************9 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++glk tLv+ + k +k+dW+m ey++ XP_009113875.1 98 ggNCGEIGLKMTLVYI---DDKVRKSDWLMYEYHI 129 544456******...455568******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.681	4	147	IPR003441	NAC domain
SuperFamily	SSF101941	1.96E-36	5	147	IPR003441	NAC domain
Pfam	PF02365	1.1E-23	6	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MSNNRVGYRF SPTDEELIKF YLKNKILGNE WLVTDAISEI NIFSYEPQFL PALSKIKSND 60 LVWYFFSPKE STKKATRRVT RSGFWKKTGR SMNINNKGGN CGEIGLKMTL VYIDDKVRKS 120 DWLMYEYHIT CLPPDQRTYV ICKIMYKGEG GDFLSGGNEV GNFPSGGNNS SSLGHSFVAE 180 SNSARATILT KMDKRQHNLP SKQTPVVDSN TVRAANFAKM YKLLQNLPSV ERQGKLNSDD 240 AP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-16	7	147	20	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-16	7	147	20	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-16	7	147	20	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-16	7	147	20	165	NO APICAL MERISTEM PROTEIN
4dul_A	2e-16	7	147	20	165	NAC domain-containing protein 19
4dul_B	2e-16	7	147	20	165	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.8967	0.0	bud\| leaf\| silique

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269\|PubMed:21450938}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009113875.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269\|PubMed:21450938}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009113875.1	0.0	PREDICTED: NAC domain-containing protein 69-like
Swissprot	Q9M126	2e-71	NAC69_ARATH; NAC domain-containing protein 69
TrEMBL	M4EFN4	0.0	M4EFN4_BRARP; Uncharacterized protein
STRING	Bra027596.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1982	19	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	4e-69	NAC domain containing protein 69

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] He L, et al. Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance. Plant Mol. Biol., 2017. 93(4-5): p. 369-387 [PMID:27975189]