PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009113624.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 264aa MW: 30397.1 Da PI: 4.6966 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 30.5 | 6.2e-10 | 29 | 110 | 13 | 99 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++ ++p +f+++ g+ ++l ++++sW+ l ++ +++ ++ ++ W eFv++n L++ D+++F++++++ f v++f+k XP_009113624.1 29 KSMRIFPEEFVRSAGEA--FVHRVVLCVLWNNSWQCWL--QQDKNGlFMVEEDWDEFVDDNLLDTDDILLFTHQDTMYF--QVRIFKK 110 45567899999999744..55579**************..6666666999**********************9887888..9999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.32E-14 | 12 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-13 | 13 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.87E-11 | 14 | 109 | No hit | No description |
SMART | SM01019 | 1.3E-10 | 16 | 111 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.673 | 17 | 111 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-7 | 28 | 110 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-7 | 163 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-6 | 164 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 6.132 | 227 | 263 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MLPESENREN LSSPSFIKSL SLGQNWKSKS MRIFPEEFVR SAGEAFVHRV VLCVLWNNSW 60 QCWLQQDKNG LFMVEEDWDE FVDDNLLDTD DILLFTHQDT MYFQVRIFKK DGKEITSVPL 120 EGEPETQPFH QETTPAYASA NGGTSSRARK GYAHVENPKR YLLNPRNPYF EKTLTKTNTV 180 LYVNTWVIEE YDLEFSPPNT HMHFLLPDGE TLDGYTKDYG GSHSFLGWAA VCERCNLRTG 240 DTVVCELELS GRVVVAVRVH LLDE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009113624.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018510844.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g25470-like isoform X1 | ||||
Swissprot | Q680D9 | 2e-94 | Y5475_ARATH; B3 domain-containing protein At5g25475 | ||||
TrEMBL | M4DXN8 | 0.0 | M4DXN8_BRARP; Uncharacterized protein | ||||
STRING | Bra021284.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25475.3 | 2e-90 | B3 family protein |