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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009113606.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
NAC |
Protein Properties |
Length: 307aa MW: 34819.7 Da PI: 6.5089 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009113606.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 55.4 | 2.1e-17 | 9 | 55 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
+ppGfrFhPtdeel+++yLkkk++ +k+e+ evi+evd++k+ePwdL+
XP_009113606.1 9 VPPGFRFHPTDEELLHYYLKKKISYQKFEM-EVIREVDLNKLEPWDLQ 55
69****************************.99*************96 PP
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2 | NAM | 63.4 | 7e-20 | 55 | 103 | 80 | 129 |
NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
+g+Wkatg+dk + + + +++g++ktLvfykgrap+g+ktdW+mheyrle
XP_009113606.1 55 QGFWKATGRDKCIRN-SYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 103
59************9.8999****************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MGSSSNGGVP PGFRFHPTDE ELLHYYLKKK ISYQKFEMEV IREVDLNKLE PWDLQGFWKA 60 TGRDKCIRNS YKKIGMRKTL VFYKGRAPHG QKTDWIMHEY RLEDADDPQG NLSEDGWVVC 120 RVFMKKNLFK VVNDGGSSIN SADQYNHDAS NNNNNTLQAR SFMHGDSPYQ LVRNHGATTF 180 ELNKPDLSLH QYPPIFHKPP SLGVDYSSGF PRDCESAASE GLQYQQACEP GLEVGTSETV 240 ANHNHQQGLG EWSMMDRLVT CHLGNEDSSR GIRFEDGNNN SSAVVQPVPT SNQLSLRSEM 300 DFWGYSK
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-33 | 9 | 127 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-33 | 9 | 127 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-33 | 9 | 127 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-33 | 9 | 127 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-33 | 9 | 127 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-33 | 9 | 127 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-33 | 9 | 127 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-33 | 9 | 127 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-33 | 9 | 127 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-33 | 9 | 127 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-33 | 9 | 127 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-33 | 9 | 127 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-33 | 9 | 127 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-33 | 9 | 127 | 17 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 10 mm long. {ECO:0000269|PubMed:20197506}. |
Uniprot | TISSUE SPECIFICITY: Expressed throughout the root cap, in both columella (COL) and lateral root cap (LRC) cells, with higher levels in the COL-adjoining LRC than the upper LRC. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269|PubMed:20197506}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY133681 | 0.0 | AY133681.1 Arabidopsis thaliana clone C103095 putative NAM/NAP (At4g10350) mRNA, complete cds. |