PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009113297.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 149aa    MW: 17076.4 Da    PI: 8.8735
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009113297.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.93.9e-125195549
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49
                    ++ +r ++NRe+A+rsR+RKk + e L+e+v  L+++N++L ++l
  XP_009113297.1 51 RKRKRTMSNRESAKRSRLRKKRRFEDLTEEVNRLKSKNQELVNQL 95
                    577999*********************************998665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-1147118IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.3E-104897No hitNo description
PROSITE profilePS5021710.7834998IPR004827Basic-leucine zipper domain
PfamPF077167.4E-94997IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.68E-105198No hitNo description
PROSITE patternPS0003605469IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MSSTSLEPVH ICFDDATITG DEITEILAFL QSDTSDNPSG SNELEAPVDE RKRKRTMSNR  60
ESAKRSRLRK KRRFEDLTEE VNRLKSKNQE LVNQLANVLS CGNAISKENN RLKTESVCLE  120
IRLLELYRFL VAMQSPISTR LNYISKLKI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15272RKRTMSNRESAKRSRLRKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009113297.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113297.11e-104PREDICTED: bZIP transcription factor 2
SwissprotQ9LQ653e-71BZIP4_ARATH; Basic leucine zipper 4
TrEMBLM4EGE11e-103M4EGE1_BRARP; Uncharacterized protein
STRINGBra027855.1-P1e-104(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122322432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59530.14e-73basic leucine-zipper 4
Publications ? help Back to Top
  1. Guo YL, et al.
    Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis.
    Plant Physiol., 2011. 157(2): p. 757-69
    [PMID:21810963]
  2. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Ma H, et al.
    ZmbZIP4 Contributes to Stress Resistance in Maize by Regulating ABA Synthesis and Root Development.
    Plant Physiol., 2018. 178(2): p. 753-770
    [PMID:30126870]