 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009113148.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
NAC |
| Protein Properties |
Length: 322aa MW: 36165.5 Da PI: 8.7368 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009113148.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 171.6 | 2.5e-53 | 16 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++
XP_009113148.1 16 LPPGFRFHPTDEELVVHYLKKKAASIPLPV-SIIAEIDLYKFDPWELPSKASFGEQEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTC 109
79****************************.89***************988899***************************************** PP
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
++++vg+kk Lvfy g+ pkg ktdW+mheyrl
XP_009113148.1 110 NSHKVGVKKALVFYGGKPPKGIKTDWIMHEYRL 142
*******************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 322 aa
Download sequence Send
to blast |
MENMGDSTIG PGHPHLPPGF RFHPTDEELV VHYLKKKAAS IPLPVSIIAE IDLYKFDPWE 60
LPSKASFGEQ EWYFFSPRDR KYPNGVRPNR AATSGYWKAT GTDKPIFTCN SHKVGVKKAL 120
VFYGGKPPKG IKTDWIMHEY RLTDGNLNTA AKPPDSTTSR KNSLRLDDWV LCRIYKKNSS 180
QRPTMERVLL REDLMEGMLS KSSANSSSTS VLDNNNNNNN NEEHFFDGMA VSSDKRSLCG 240
QYRIGHEASG SSSFGSFLSS KRFHHTSDIN NDNYNVSFVS MLSEIPQSSG FHGNGVIDTM 300
STLADHGVLR QAFQLPNMNW HP
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_B | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_C | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_D | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_A | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_B | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_C | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_D | 4e-74 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}. |
| Uniprot | TISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF974759 | 0.0 | KF974759.1 Brassica napus NAC transcription factor 25-1 (NAC25-1.1) mRNA, complete cds. |
