PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009113124.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 336aa    MW: 36973.5 Da    PI: 7.0081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009113124.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29e-062262641154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++++ +  L++l+ +      +K + a++L++ +eYIk L
  XP_009113124.1 226 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQESIEYIKFL 264
                     5788999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.585215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.56E-6225268No hitNo description
SuperFamilySSF474591.03E-10225281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-9229272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSPSDHFLSP CFGQREADSD SGGSTVSIDS TLQMMGLGFS SNSSSDWNQT VLQEDLNSSF  60
ISSQDHYHGQ GFLSTTSSPY LLNPACSSSS SPSPPSSSLL QTFYDQEPSQ YRFLSTTSCS  120
INDPQLSWAS SKTSPHHQAA YGIINNFSNS TNSRPFWSSS STTNLNNTPH NSFVTYSQII  180
PTRLEDKTKN QKTKGQSESL KRAKDNDSAS KKQRISTPSP LPTFKVRKEN LRDQITSLQQ  240
LVSPFGKTDT ASVLQESIEY IKFLHDQVTV LSTPYMKQGA SVQQQHQKSG KSQDGNENQE  300
LRAHGLCLVP ISSTFPVANE TTADFWTPTF GGNSFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009113124.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3806490.0AF380649.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds.
GenBankAY0856020.0AY085602.1 Arabidopsis thaliana clone 159557 mRNA, complete sequence.
GenBankAY1130720.0AY113072.1 Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113124.10.0PREDICTED: transcription factor bHLH112-like isoform X4
RefseqXP_018510602.10.0PREDICTED: transcription factor bHLH112-like isoform X4
SwissprotQ94JL30.0BH112_ARATH; Transcription factor bHLH112
TrEMBLM4EE690.0M4EE69_BRARP; Uncharacterized protein
STRINGBra027080.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]