 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009113084.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
TALE |
| Protein Properties |
Length: 382aa MW: 43010.3 Da PI: 6.5877 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009113084.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 28.9 | 1.9e-09 | 308 | 342 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55
k +yps++++ LA+++gL+++q+ +WF N+R ++
XP_009113084.1 308 KWPYPSEQQKLALAESTGLDQKQINNWFINQRKRH 342
569*****************************885 PP
|
| 2 | ELK | 41 | 3.9e-14 | 262 | 283 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK qLlrKYsgyLgsLkqEF+
XP_009113084.1 262 ELKGQLLRKYSGYLGSLKQEFM 283
9********************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009934 | Biological Process | regulation of meristem structural organization |
| GO:0048440 | Biological Process | carpel development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 382 aa
Download sequence Send
to blast |
MESGSNSTSC PMAFAGDNSD GPMCPMMMMM MPVITSHQQH HGHDQQHQHQ QQHDGYAYQS 60
HHQQSSSLFL QSLTPPSQEA KNKVTSSCSP SSGAPAYSFM EINHQNELLA GGLNPCSSAS 120
VKAKIMGHPH YHRLLLAYVN CQKVGAPPEV QARLEETCSS AAAAAASMGP TGSLGEDPGL 180
DQFMEAYCEM LVKYEQELSK PFKEAMVFLQ HVECQFKSLS LSSPSSFSGY GEAAIERNNN 240
GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL 300
DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH 360
HYFMDNVMGN PFPIDHISST ML
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 277 | 286 | LKQEFMKKRK |
| 2 | 283 | 287 | KKRKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Required for shoot apical meristem formation during embryogenesis. Probably binds to the DNA sequence 5'-TGAC-3' (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GU480585 | 0.0 | GU480585.1 Brassica rapa SHOOT MERISTEMLESS (STM) mRNA, complete cds. |
