PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112977.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 632aa    MW: 71112 Da    PI: 7.0923
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112977.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS419.72.6e-1282546241373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     lv+lL+ c ea+++++ +++++l+ar  elasp+g +pm+Rl++y+ eALa r++r++++++++ pp+e +++   e   a +++++++Pi+kf 
  XP_009112977.1 254 LVNLLTGCLEAIRTRNIAAINHLIARTGELASPRGtTPMTRLISYYIEALALRVSRMWPHIFHIAPPREFERT--LEDDDAWRFLNQATPIPKFI 346
                     6899*******************************99*********************************964..44446999************ PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h taN+++l+a+eg+ervHiiDfdi+qGlQWp+++q+LasR+++p ++RiTgvg+    sk+el+etg+rL+ fAe++++pfef++ v++rled+
  XP_009112977.1 347 HYTANEMLLRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRSNPPRHVRITGVGE----SKHELNETGDRLRGFAEAMNLPFEFHP-VVDRLEDV 436
                     *******************************************************....9**************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +l++L+vk+gEa+aVn+v+q+h++l + ++ ++    ++ lv+s++P  vv++eqea+h+s+++ +r++++l+yysa+fd +++ l+++s  r+k
  XP_009112977.1 437 RLWMLHVKEGEAVAVNCVMQIHKTLYDGAAFRN----FVGLVRSTNPVAVVIAEQEAEHDSAQLETRVCNSLKYYSAVFDVMHTHLGADSLMRVK 527
                     *************************99999999....********************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdg.yrveee.....sgslvlgWkdrpLvsvS 371
                     +E++l+grei+n+va eg++r+erh  +++Wr+++e+ GF+++ +se+++ q k+llr+++  ++g ++ve +      g l+lgW d+pL+++S
  XP_009112977.1 528 IEEVLFGREIRNIVAWEGSHRQERHVGFGQWRRMMEQLGFRSLGVSEREVLQSKMLLRMYGdgDEGfFNVERSaeegdGGGLTLGWLDQPLYTIS 622
                     ************************************************************97445599999444456578899************ PP

            GRAS 372 aW 373
                     aW
  XP_009112977.1 623 AW 624
                     ** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.827228597IPR005202Transcription factor GRAS
PfamPF035148.9E-126254624IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MLAGCSSSSL LSPTRRLRSE AVAATVSVHF PMNTQRLDLP CSSSFSRKEP IERKSGGCSL  60
KQSIKLPPLA TTRGNTEGFS WNNDNNIVKK KKSLKRFAEE NKVDKSCLSR VKRQIGGDDD  120
HNRGFWFEHL TAQNSSQALP FSLTCSSDDY EEKVWFAPSE VISQPLQSNN PNWANSVITT  180
ELAGLGDKDI ESSSRPAAVK EASGSSTSAS SDSRHRVPEP TNGSRNQYSH RGGNTEERTI  240
NNNHMNDSQR DFELVNLLTG CLEAIRTRNI AAINHLIART GELASPRGTT PMTRLISYYI  300
EALALRVSRM WPHIFHIAPP REFERTLEDD DAWRFLNQAT PIPKFIHYTA NEMLLRAFEG  360
KERVHIIDFD IKQGLQWPSF FQSLASRSNP PRHVRITGVG ESKHELNETG DRLRGFAEAM  420
NLPFEFHPVV DRLEDVRLWM LHVKEGEAVA VNCVMQIHKT LYDGAAFRNF VGLVRSTNPV  480
AVVIAEQEAE HDSAQLETRV CNSLKYYSAV FDVMHTHLGA DSLMRVKIEE VLFGREIRNI  540
VAWEGSHRQE RHVGFGQWRR MMEQLGFRSL GVSEREVLQS KMLLRMYGDG DEGFFNVERS  600
AEEGDGGGLT LGWLDQPLYT ISAWGIGGSS SF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6526162426378Protein SCARECROW
5b3h_A4e-6526162425377Protein SCARECROW
5b3h_D4e-6526162425377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009112977.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894370.0AC189437.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069A23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112977.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLM4EFQ70.0M4EFQ7_BRARP; Uncharacterized protein
STRINGBra027620.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein