 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009112830.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
ERF |
| Protein Properties |
Length: 305aa MW: 33176.2 Da PI: 9.4271 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009112830.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 52.2 | 1.5e-16 | 119 | 169 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
y+GVr+++ +g+W+A Ir p + r r++lg++ tae Aa a+++a+ kl+ge
XP_009112830.1 119 LYRGVRQRH-WGKWAAGIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 169
59******9.**********954...5**************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 305 aa
Download sequence Send
to blast |
MEEHNYHFQT NLSPKISEIR ASLSQIILAG GPNTLDSVFS FLATSSATTS LDTLNPPPPQ 60
LGSSVYLHQR DLIESFHLQN RAISTPPPLF SSSFDHQSSP AAAFAAALAA GRTAKKKKLY 120
RGVRQRHWGK WAAGIRLPQN RMRVWLGTYE TAEAAAYAYD RAAYKLRGEY ARLNFPNIKD 180
PSELLGLGDS SKLTALKNAV DGKIQSICQR VRRERAKKSG KGSKDSSSSS PGSLSSPAAT 240
ATAADSENSY WNSKNSSPAS VSISDEMPAT TTAAAEEDMM MDTEGFLLAR MPSFDPELIW 300
EVLAN
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC066689 | 1e-128 | AC066689.5 Arabidopsis thaliana chromosome 1 BAC F15H21 genomic sequence, complete sequence. |
| GenBank | AK228763 | 1e-128 | AK228763.1 Arabidopsis thaliana mRNA for AP2-containing DNA-binding protein, complete cds, clone: RAFL16-09-E15. |
| GenBank | AY560876 | 1e-128 | AY560876.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g64380) mRNA, complete cds. |
| GenBank | BT033082 | 1e-128 | BT033082.1 Arabidopsis thaliana unknown protein (At1g64380) mRNA, complete cds. |
| GenBank | CP002684 | 1e-128 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
