PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112713.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 257aa    MW: 28833.3 Da    PI: 8.8458
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112713.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.56.6e-1573125155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++++h ++Er+RR ++ s f  Lr+llP       ++K s a+ + +Av+YIk+Lq
  XP_009112713.1  73 KKMKHRAIERQRRFEVSSLFKSLRSLLPLqY---IQGKRSTADHVSQAVNYIKDLQ 125
                     6899*************************66...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.65E-1470129No hitNo description
SuperFamilySSF474599.03E-1771147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.09772124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-1273125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1373141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-678130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDFVTSMFMP DLTDEDGLLF SDSFLLPPLI AYQNHDVCNQ ITYKNGVSNK KRSLCDTYVA  60
SEANNGDGDR ESKKMKHRAI ERQRRFEVSS LFKSLRSLLP LQYIQGKRST ADHVSQAVNY  120
IKDLQNKIKK LNEKKDRLKK SLPSTLTAHP TAEECTSSLS SSLSTSSSRC SCVGDKHITV  180
MVMPCFVGME IIISCCLERN KSCLSIALQI LAQEERLSVV SCLSTRLQQR FVHTIVSQVG  240
SGIKINISEL KDKIVNM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009112713.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112713.10.0PREDICTED: transcription factor bHLH125
RefseqXP_013660180.10.0transcription factor bHLH125-like
SwissprotQ9LQ081e-119BH125_ARATH; Transcription factor bHLH125
TrEMBLA0A3P5XX800.0A0A3P5XX80_BRACM; Uncharacterized protein
STRINGBra036640.1-P1e-176(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62975.14e-98bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]