PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112483.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 331aa    MW: 37163.8 Da    PI: 6.1172
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112483.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.5e-09192238555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  XP_009112483.1 192 HSLAERARREKISKKMKYLQDLVPGC----NTVTGKAGVLDEIINYVQSLQ 238
                     999***********************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-16185255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-8185242No hitNo description
PROSITE profilePS5088814.869187237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16188254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-6192238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-9193243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MLEGLVSPES LSFSYADMSV PERLKWLQQH QQQEVLSLSS NDSPELLQIL QFHGSNNDEL  60
LQSTFSHFQM VGSGFGTNYN MGFGHSHEAM DGCISRTSSC QIHPPDAMGV MLKNSEENRA  120
ISLKNKRKSE DKTREEEKTE KKIKVEAERE SNISNKEASS DTSKETSKGA SQIQKLDYIH  180
VRARRGQATD RHSLAERARR EKISKKMKYL QDLVPGCNTV TGKAGVLDEI INYVQSLQRQ  240
VEFLSMKLAV INPELEFAVE DLSVKQFQAY FTNFPVVIAS KPSVMVDVPL FPLDQQGSLN  300
LSVSNPNQTS IDAPSESWET QSQNLFASVL R
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.42540.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in hypocotyls and cotyledons. Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:23221598}.
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009112483.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325500.0AC232550.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011J16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112483.10.0PREDICTED: transcription factor HBI1-like isoform X1
SwissprotQ9ZPW31e-176HBI1_ARATH; Transcription factor HBI1
TrEMBLM4F8150.0M4F815_BRARP; Uncharacterized protein
STRINGBra037226.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.21e-161bHLH family protein