PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112337.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 394aa    MW: 44228.2 Da    PI: 5.9067
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112337.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.83.8e-3871061100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +C+aCk+lrr+C+++Cv+ap+f a+qp+kf +vhk FGasnv kll++l  ++reda++slvyeAe r++dPvyG+vg+i+  qq+l+q + +++
  XP_009112337.1   7 PCSACKFLRRRCTRECVFAPHFSADQPNKFSCVHKAFGASNVAKLLSELTFNQREDAVTSLVYEAETRIQDPVYGCVGLISLQQQRLKQIQRDTD 101
                     7*******************************************************************************************999 PP

          DUF260  96 llkee 100
                     ++++e
  XP_009112337.1 102 VARRE 106
                     88876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.9336107IPR004883Lateral organ boundaries, LOB
PfamPF031957.3E-387104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MASSNSPCSA CKFLRRRCTR ECVFAPHFSA DQPNKFSCVH KAFGASNVAK LLSELTFNQR  60
EDAVTSLVYE AETRIQDPVY GCVGLISLQQ QRLKQIQRDT DVARRELATY IGPQAMLPIL  120
QPQQTHLMPQ TPPLQQFVPE TKQAYFMPET QQQTQQPQPE TQQTQFMPQT QETQFMPQTD  180
QTQSMPQTQQ MQFMPQTQKF MPQTQRPSSS SVSAGLTQQQ HHDLFPSMAI PTAQLYQQQF  240
FEFQQLEAVA REKHSEMLRA YGEEGSSSSH QHHQNQPEAQ VLRFNDGFDS VPTGSVTSTG  300
FNQLTPSGTT VTSVSHSLAL GGTYDIETQL TMPTQSSQQL PLQTHDAQLF MSTQASKPQQ  360
QHCEAQLSMP SQSSQPLPLQ TKETQTSSES DEGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3641108114LOB family transfactor Ramosa2.1
5ly0_B2e-3641108114LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269|PubMed:15821980}.
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009112337.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018510216.10.0PREDICTED: LOB domain-containing protein 36-like
SwissprotQ9FKZ38e-63LBD36_ARATH; LOB domain-containing protein 36
TrEMBLM4F7T10.0M4F7T1_BRARP; Uncharacterized protein
STRINGBra037142.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2654433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.16e-65ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]