PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112221.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 201aa    MW: 22550.8 Da    PI: 9.4982
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112221.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.51.4e-121362150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k++e++  r +tf kR++gi+KK +E+   C++e++ ++f ++g  ++++
  XP_009112221.1 13 KKVESYKARRTTFYKRKAGIFKKMNEIIAECGVEASFLVFPESGYPRTFA 62
                    5789****************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.558565IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-13564IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-18679IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-8727IPR002100Transcription factor, MADS-box
PfamPF003191.1E-131461IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-82742IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-84263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MKHTKGKQKI EMKKVESYKA RRTTFYKRKA GIFKKMNEII AECGVEASFL VFPESGYPRT  60
FAHPSMEDAV DRVKCSLGHE PSGKDDASIG SLVEAHKKRK NEELAKKLCD LHEELKMAEE  120
KEKKMVEKKK IKELKNEWPN TLNEGVNKDE LKRVHQAFVE LSYSLSGKAL QRLGKNGDGS  180
SSALAERGYC DGGEAGAGEQ T
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009112221.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112221.11e-146PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_013658039.11e-146agamous-like MADS-box protein AGL61
RefseqXP_013658040.11e-146agamous-like MADS-box protein AGL61
TrEMBLA0A397XRR21e-145A0A397XRR2_BRACM; Uncharacterized protein
STRINGBra037759.1-P1e-137(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.17e-42AGAMOUS-like 57