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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009112214.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
C2H2 |
Protein Properties |
Length: 231aa MW: 25027.5 Da PI: 7.8797 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009112214.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
ykC+ CgksFs+ L H +H
XP_009112214.1 88 YKCTVCGKSFSSYQALGGHKTSH 110
9***********99998888777 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MALETLNSPT SATATARPFL RYREEMEPEN LEQWAKRKRT KRQRFDHNQE KTPSEEEYLA 60 LCLLMLARGS TVQSLPPPSL PSSDHRGYKC TVCGKSFSSY QALGGHKTSH RKPVNNTDVP 120 SNQEPFNNTH RNSNGGSVVI NGNGVSQSGK THTCSICFKS FSSGQALGGH KRCHYDGGNN 180 GNGSSSNSVE VIGGSDVSDV DDERSSEQSG IGGHRGFDLN LPADQVTVVI S
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and stems. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC189526 | 0.0 | AC189526.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092J12, complete sequence. |