PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112156.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 381aa    MW: 41497.4 Da    PI: 7.8846
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112156.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-20176225255
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrd +     + +r++lg+f++ae Aa+a+++a+++++g
  XP_009112156.1 176 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDSAESAARAYDEAALRFRG 225
                     7********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.356176233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-32176234IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-22176234IPR016177DNA-binding domain
CDDcd000181.42E-33176235No hitNo description
PfamPF008476.3E-14176225IPR001471AP2/ERF domain
SMARTSM003809.5E-37176239IPR001471AP2/ERF domain
PRINTSPR003673.0E-11177188IPR001471AP2/ERF domain
PRINTSPR003673.0E-11199215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MCALKVADQE GNVGKKAEPT TREDDDHRTL SDIDQWLYSF SAEDDHLHLD NSLTPPSSSL  60
SISREKEMSA IVSALTHVVA GNVPTRQYGG EGTSNSSSSS GQKRRRELEE GGGGGKDVKA  120
ANTLTVDQYF AGGSSSSRVG EASSNMSGSV PTYEYTTTPN ANTETSLLSG DGPQRRYRGV  180
RQRPWGKWAA EIRDPFKAAR VWLGTFDSAE SAARAYDEAA LRFRGNKAKL NFPENVKLVR  240
PASTTPTLSV PQTAVQRPTQ LRNSGSTSTI LPVRHASDQN VHSQLLMQSY NFSYLELAHH  300
QQQFQHQQQS LYDQVSFPLR FGHTGGSTMQ STSTSLSRSM FSPAAVQPKP ESASETGHLF  360
DLQSLGKASN NNNNYNNSPS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-23175236163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous with lower levels in seeds and siliques. {ECO:0000269|PubMed:16227468}.
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009112156.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7138250.0JQ713825.1 Brassica juncea ethylene-responsive transcription factor ABR1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112156.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
SwissprotQ9FGF81e-143ABR1_ARATH; Ethylene-responsive transcription factor ABR1
TrEMBLA0A3P5YCE70.0A0A3P5YCE7_BRACM; Uncharacterized protein
TrEMBLM4F9N10.0M4F9N1_BRARP; Uncharacterized protein
STRINGBra037794.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91182137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.11e-108ERF family protein
Publications ? help Back to Top
  1. Choi DS,Hwang BK
    Proteomics and functional analyses of pepper abscisic acid-responsive 1 (ABR1), which is involved in cell death and defense signaling.
    Plant Cell, 2011. 23(2): p. 823-42
    [PMID:21335377]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Sanyal SK, et al.
    Arabidopsis CBL interacting protein kinase 3 interacts with ABR1, an APETALA2 domain transcription factor, to regulate ABA responses.
    Plant Sci., 2017. 254: p. 48-59
    [PMID:27964784]
  5. Choi SW,Lee SB,Na YJ,Jeung SG,Kim SY
    Arabidopsis MAP3K16 and Other Salt-Inducible MAP3Ks Regulate ABA Response Redundantly.
    Mol. Cells, 2017. 40(3): p. 230-242
    [PMID:28292003]