PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009112070.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 388aa MW: 42289.2 Da PI: 10.2142

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009112070.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.2	3.6e-13	310	363	5	58
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r+rr++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+k+ e+ ++ ++ XP_009112070.1 310 RRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKVNQELQKKQAEMMEMQKN 363 69***************************************9988777777654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-10	306	371	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.553	308	359	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.26E-22	310	362	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.6E-13	310	359	No hit	No description
SuperFamily	SSF57959	7.5E-10	310	359	No hit	No description
Pfam	PF00170	7.1E-11	310	363	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	313	328	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MGTHVNFNNL GGGGGGEGSN QMKPTDNAYP LARQSSLYSL TFDELQSTLL GGPGKDFGSM 60 NMDELLKSIW TAEEAQAMTM NPSSTATAVA QPGGGIPLQR QGSLTLPRTI SQKTVDEVWK 120 CLFTKDGNMV GSSGGGSESN APQRQQTLGE ITLEEFLLRA GVVREDNNNN NGFYSNNGGL 180 GFGFGQPNQN NISFNNGTND SMILKQPPHQ QFQQQLQPRQ QLNQPPHPPP HQRMPQTIFP 240 KQANVAFAGA GNNAGNNNNN GLGSFGGGGV TVAATSPGTS SAENNSLSPV PYVLNRGRRS 300 NTGLEKVIER RQRRMIKNRE SAARSRARKQ AYTLELEAEI EKLKKVNQEL QKKQAEMMEM 360 QKNELKESSK QPWGSKRQCL RRTLTGPW

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MGTHVNFNNL GGGGGGEGSN QMKPTDNAYP LARQSSLYSL TFDELQSTLL GGPGKDFGSM  60
NMDELLKSIW TAEEAQAMTM NPSSTATAVA QPGGGIPLQR QGSLTLPRTI SQKTVDEVWK  120
CLFTKDGNMV GSSGGGSESN APQRQQTLGE ITLEEFLLRA GVVREDNNNN NGFYSNNGGL  180
GFGFGQPNQN NISFNNGTND SMILKQPPHQ QFQQQLQPRQ QLNQPPHPPP HQRMPQTIFP  240
KQANVAFAGA GNNAGNNNNN GLGSFGGGGV TVAATSPGTS SAENNSLSPV PYVLNRGRRS  300
NTGLEKVIER RQRRMIKNRE SAARSRARKQ AYTLELEAEI EKLKKVNQEL QKKQAEMMEM  360
QKNELKESSK QPWGSKRQCL RRTLTGPW

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.27397	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and immatures siliques. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:11884679}.

Functional Description ? help Back to Top
Source	Description
UniProt	Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16463099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009112070.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX122894	0.0	JX122894.1 Brassica napus ABA-responsive element binding factor 4 (ABF4.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009112062.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Refseq	XP_009112070.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Refseq	XP_018513767.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Swissprot	Q9M7Q2	1e-177	AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBL	M4F8X1	0.0	M4F8X1_BRARP; Uncharacterized protein
STRING	Bra037533.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	1e-107	abscisic acid responsive element-binding factor 1

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Muñiz García MN,Cortelezzi JI,Fumagalli M,Capiati DA Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance. Plant Mol. Biol., 2018. 98(1-2): p. 137-152 [PMID:30143991]