 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009112059.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
LBD |
| Protein Properties |
Length: 176aa MW: 19265.8 Da PI: 8.371 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009112059.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 135.9 | 1.5e-42 | 12 | 110 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
+CaaC +lrrkC ++C+ pyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l++el+
XP_009112059.1 12 PCAACTFLRRKCMPGCISPPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELD 106
7*********************************************************************************************9 PP
DUF260 96 llke 99
++++
XP_009112059.1 107 AANA 110
9876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 176 aa
Download sequence Send
to blast |
MASSSSNTYK SPCAACTFLR RKCMPGCISP PYFPPEEPHK FANVHKIFGA SNVTKLLNEL 60
LPHQREDAVN SLAYEAEARV RDPVYGCVGA ISYLQRQVHR LQKELDAANA DLVHYGLSTS 120
TPSNVVDLVF QPQPLPQQPQ QVNPVYRLPG ASRGTGGSCG TFLPWNNGHN QQGGNM
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in a band of cells at the adaxial base of all lateral organs formed from the shoot apical meristem and at the base of lateral roots. {ECO:0000269|PubMed:12068116}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB008265 | 1e-130 | AB008265.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDC12. |
| GenBank | AB164305 | 1e-130 | AB164305.1 Arabidopsis thaliana ASL4 mRNA for ASYMMETRIC LEAVES2-like gene 4 protein, partial cds. |
| GenBank | AB473837 | 1e-130 | AB473837.1 Arabidopsis thaliana ASL4 mRNA for ASYMMETRIC LEAVES2-like 4 protein, complete cds. |
| GenBank | AF447897 | 1e-130 | AF447897.1 Arabidopsis thaliana LOBa (LOB) mRNA, complete cds; alternatively spliced. |
| GenBank | BT025745 | 1e-130 | BT025745.1 Arabidopsis thaliana At5g63090 mRNA, complete cds. |
| GenBank | CP002688 | 1e-130 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
