 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009111919.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
C3H |
| Protein Properties |
Length: 359aa MW: 39797.4 Da PI: 7.8656 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009111919.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 21.7 | 3.5e-07 | 80 | 105 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
ykt+ C f + GtC Gd C+FaHg+
XP_009111919.1 80 YKTRMCAKFKA-GTCMNGDPCNFAHGM 105
9**********.*************95 PP
|
| 2 | zf-CCCH | 17.1 | 9.7e-06 | 169 | 183 | 11 | 25 |
GTS.--TTTTT-SS-S CS
zf-CCCH 11 rtG.tCkyGdrCkFaH 25
G +C+yGdrC+F H
XP_009111919.1 169 F-GeECPYGDRCNFVH 183
5.449*********** PP
|
| 3 | zf-CCCH | 36 | 1.1e-11 | 246 | 271 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt++C+ f G+C++Gd+C+FaHg+
XP_009111919.1 246 WKTRICMKFEN-GQCPFGDNCHFAHGQ 271
8**********.*************97 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 9.1E-15 | 77 | 112 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.83E-8 | 78 | 110 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0051 | 79 | 105 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.061 | 79 | 106 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.96E-6 | 158 | 184 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 11.779 | 158 | 186 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.018 | 158 | 185 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.1E-7 | 160 | 184 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.67E-9 | 241 | 275 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.9E-14 | 242 | 274 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.882 | 245 | 272 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.2E-7 | 245 | 271 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.6E-9 | 246 | 271 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 359 aa
Download sequence Send
to blast |
MDSSYSDSRP MFVQSPYGGG WNQTQTNDSM NNEQSESESQ SQPSLKRPRL HDDTVFNPTS 60
NNSSWMAPPS MNKGTANIFY KTRMCAKFKA GTCMNGDPCN FAHGMEDLRQ PPSNWQEIVG 120
PPPPPAVQDR GRERERERER PSSSSVSASN WEDDQKIILR MKLCRKFCFG EECPYGDRCN 180
FVHQDLSKFR DESGKLRESL AISVGTDPAS VENGGGTGSH QVEVNRRGGI PVPASLNNGV 240
VKTVYWKTRI CMKFENGQCP FGDNCHFAHG QAELLHYSGE AVKAVASLSK QTVVPGNEAF 300
AMKPSAAQVV TSDASGLNDE GRRKKCLLKW SDSKKINRIY GDWIDDLPVG QKSTKPVES
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 129 | 139 | RGRERERERER |
