PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111877.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 140aa    MW: 16195.2 Da    PI: 9.9947
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111877.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.65.7e-081578460
                    XCHHHCHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeiee.......LeekvkeLeaeNkaLkkeleelkkevaklk 60
                     k+ +rk +NRe+ArrsR++K++ +e        Le+++ke ++  k  k +l++l+ e a l+
  XP_009111877.1 15 EKKRKRKLSNRESARRSRLKKQKMMEDtiheistLERRIKEYSERCKVAKRRLDSLESENAGLR 78
                    5999******************977651111111666666666666666666666666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.2E-101095No hitNo description
SMARTSM003381.3E-91276IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4961477IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.31E-71670No hitNo description
PfamPF001701.2E-61681IPR004827Basic-leucine zipper domain
CDDcd147022.70E-101768No hitNo description
PROSITE patternPS0003601934IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006521Biological Processregulation of cellular amino acid metabolic process
GO:0009267Biological Processcellular response to starvation
GO:0009617Biological Processresponse to bacterium
GO:0009651Biological Processresponse to salt stress
GO:0009901Biological Processanther dehiscence
GO:0010182Biological Processsugar mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MANAEKTSSG SDIDEKKRKR KLSNRESARR SRLKKQKMME DTIHEISTLE RRIKEYSERC  60
KVAKRRLDSL ESENAGLRSE KTWLSSYVRD LENMMATTSL TLTQRGGDEQ EANADGDCRR  120
RPSWQQYGCD SLQPVASFKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11421EKKRKRKL
21520KKRKRK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in seeds during late stage of development. {ECO:0000269|PubMed:18841482}.
UniprotTISSUE SPECIFICITY: Expressed in both shoots, including young leaves, stipulae and trichomes (except in cotyledons and hypocotyl), and roots, including vascular tissues (e.g. in both the phloem and the xylem). Present in seeds and pollen. Restricted to vasculatures and roots in the presence of sucrose or glucose. {ECO:0000269|PubMed:18841482, ECO:0000269|PubMed:20080816}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters involved in sugar signaling. Activated by low energy stress both at transcriptional and post-transcriptional mechanisms. Promotes dark-induced senescence and participates in the transcriptional reprogramming of amino acid metabolism during the dark-induced starvation response (PubMed:20080816, PubMed:21278122). Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter (PubMed:24243147). {ECO:0000269|PubMed:20080816, ECO:0000269|PubMed:21278122, ECO:0000269|PubMed:24243147}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111877.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Reversibly repressed by glucose and mannose. Slowly induced by Pseudomonas syringae. Induced in roots upon cold and salt stress but then repressed in leaves. Promoted by low energy stress and dark-induced starvation. {ECO:0000269|PubMed:18841482, ECO:0000269|PubMed:20080816, ECO:0000269|PubMed:21278122}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527591e-107AK352759.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-E19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111876.18e-99PREDICTED: basic leucine zipper 1-like isoform X1
RefseqXP_009111877.18e-99PREDICTED: basic leucine zipper 1-like isoform X2
SwissprotQ9FGX23e-73BZIP1_ARATH; Basic leucine zipper 1
TrEMBLA0A397XR982e-97A0A397XR98_BRACM; Uncharacterized protein
STRINGBo9g009810.13e-93(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49450.11e-75basic leucine-zipper 1
Publications ? help Back to Top
  1. Mair A, et al.
    SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants.
    Elife, 2016.
    [PMID:26263501]
  2. Doidy J, et al.
    "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run".
    BMC Genomics, 2016. 17: p. 92
    [PMID:26843062]
  3. Dash M, et al.
    Poplar PtabZIP1-like enhances lateral root formation and biomass growth under drought stress.
    Plant J., 2017. 89(4): p. 692-705
    [PMID:27813246]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Lee DH,Park SJ,Ahn CS,Pai HS
    MRF Family Genes Are Involved in Translation Control, Especially under Energy-Deficient Conditions, and Their Expression and Functions Are Modulated by the TOR Signaling Pathway.
    Plant Cell, 2017. 29(11): p. 2895-2920
    [PMID:29084871]
  6. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]
  7. Para A,Li Y,Coruzzi GM
    μChIP-Seq for Genome-Wide Mapping of In Vivo TF-DNA Interactions in Arabidopsis Root Protoplasts.
    Methods Mol. Biol., 2018. 1761: p. 249-261
    [PMID:29525963]