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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009111836.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 264aa MW: 28218.4 Da PI: 6.5015 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.1 | 8.8e-05 | 153 | 192 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_009111836.1 153 VRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 192 67788999*********999.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.839 | 142 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-11 | 150 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.01E-4 | 151 | 196 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.9E-7 | 152 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MGDTREDQED RAMMETAGVS SFSELLMLSG GVLSSSDHHL NDIGADGGED SFGFVFSGST 60 GSRMLCFSGD CQNDDESLFL QPSLPSGVSV SDPSCTTNIC KNSNDACADN KSTKSSTKKR 120 IGSVNGQTMD HNRKPSKKCK QNQEKPSVGT AKVRKERLGE RIAALQQLVS PYGKTDAASV 180 LHEAMGYIKF LQDQIQVLCS PYLTNYSLDG GVVTGDVRAG KKVRDLRSRG LCLVPVSSTV 240 LLESSNGADF WSPATMGHTT SSSH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009111836.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009111836.1 | 0.0 | PREDICTED: transcription factor bHLH113-like isoform X1 | ||||
Refseq | XP_013675099.1 | 0.0 | transcription factor bHLH113 isoform X1 | ||||
Swissprot | Q9LT67 | 1e-146 | BH113_ARATH; Transcription factor bHLH113 | ||||
TrEMBL | A0A078IJH5 | 0.0 | A0A078IJH5_BRANA; BnaA01g26110D protein | ||||
TrEMBL | A0A3P5ZX88 | 0.0 | A0A3P5ZX88_BRACM; Uncharacterized protein | ||||
TrEMBL | M4FAU6 | 0.0 | M4FAU6_BRARP; Uncharacterized protein | ||||
STRING | Bra038211.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7402 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 1e-129 | bHLH family protein |
Publications ? help Back to Top | |||
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