![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
XP_009111687.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
Family |
C2H2 |
Protein Properties |
Length: 264aa MW: 29078.9 Da PI: 9.7634 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009111687.1 | genome | NCBI | View CDS |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Bra&pid=XP_009111687.1) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 14.5 | 0.00011 | 105 | 127 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
ykC+ Cgk F++ L H +H
XP_009111687.1 105 YKCSVCGKAFPSYQALGGHKASH 127
9***********99999998887 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 264 aa
Download sequence Send
to blast |
MALEAMNSPS FTVRKDRIEA TNDDLTNDAV FMEPWLKRKR SKRQRSRSPS PSTSSSSPPR 60 SRRPKYESQD LTEEEYLALC LLKLAKDKHS PPPQPQPRDS TKLSYKCSVC GKAFPSYQAL 120 GGHKASHRIK PLTADNSTSP IIAGEKHHSS ATVPPSGKIH ECSICRKVFP TGQALGGHKR 180 CHYEGNLGGG SKSISQSGSV SSTVSEDRSN RVLIDLNLPA LPELSLHHNP VVDDEILSPL 240 TGKKPLLLTD RDRVIEKEDL SLRI
|
Nucleic Localization
Signal ? help
Back to Top |
![NLS](draw_nls.php?sp=Bra&pid=XP_009111687.1) |
No. |
Start |
End |
Sequence |
1 | 35 | 42 | LKRKRSKR |
2 | 41 | 46 | KRQRSR |
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, radicles, cotyledons, hypocotyls, leaf veins, stems, sepals, petals, stamens, placenta, funiculi and maturated seeds. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:20619483}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. Acts as a negative regulator of abscisic acid (ABA) signaling during seed germination. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. May act as a positive regulator of leaf senescence. Has been identified as a suppressor of the deficiency of yeast snf4 mutant to grow on non-fermentable carbon source. {ECO:0000269|PubMed:10929106, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415, ECO:0000269|PubMed:22709441}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: By abscisic acid (ABA), ethylene, salt, cold, dehydration and the monovalent and divalent cations Li(+), Na(+), K(+), Cs(+), Ca(2+) and Mg(2+). {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415}. |